PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001509.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25219 Da    PI: 8.3191
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001509.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF771.4e-241562249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               + en+sn+qvtfskRr+gi+KKA ELSvLC+a va+i+fs  gk++ y
  Rmu_sc0001509.1_g000008.1 15 KLENSSNKQVTFSKRRAGIFKKAGELSVLCGAHVAIIVFSGAGKVFCY 62
                               679*****************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSKKTQGRKK IEIKKLENSS NKQVTFSKRR AGIFKKAGEL SVLCGAHVAI IVFSGAGKVF  60
CYGHPNINTV LESYQNGLSS VVRVNEEAGD LLVEEFNKEY VEAEKEFEDL KRKATGIKQM  120
ADEKKKMLKE MNMSEGFWWD EAVDLAMMDE REWEQYFKAL EELRRKVAAR VDELKILNGT  180
MMGPPVPAVH HRLCHVPLMT ANNRFGNCQD VQFGSGYHDL GV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-31M-type_MADS family protein