PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001482.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 303aa    MW: 34408.2 Da    PI: 7.1472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001482.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-072467344
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                WT eE +++ +a + +  +   +W  Ia +++ g+t+ ++   +
  Rmu_sc0001482.1_g000009.1 24 DWTREENKQFERALAIYDEKtpdRWGMIALMIP-GKTAVDVFKQY 67
                               6********************************.****9986655 PP
2Myb_DNA-binding39.31.5e-12125169347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT++E+++++++  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Rmu_sc0001482.1_g000009.1 125 PWTEDEHLRFLKGLLKYGKGDWRNISRNFVFSKTPTQVASHAQKY 169
                                7*****************************778***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MQTLYPPSYM ADTNWFVQGS QSSDWTREEN KQFERALAIY DEKTPDRWGM IALMIPGKTA  60
VDVFKQYKEL EDDVSDIEAG LVEIPGYQQP SSFTLELVDD RNFDANRKRS AATRGSDQER  120
KKGIPWTEDE HLRFLKGLLK YGKGDWRNIS RNFVFSKTPT QVASHAQKYF MRQHSGGKDK  180
RRPSIHDITT VNLTSTTTTS PSQNNNRPPL DQSPPPEHNN KSTESPRVVP DWNMPNDGLA  240
GAMIFGATHG DLFESSSPFD VGSPDDLKLH WQKLYASATH YAAHARSPSS MYLMQTSRHQ  300
IHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.19e-81MYB family protein