PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001478.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

M-type_MADS

Protein Properties

Length: 376aa MW: 42854.5 Da PI: 6.739

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001478.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.2	2.5e-19	13	54	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i +++ r +tf kR++gilKKA+E S+LC+++ ++ii+++++ Rmu_sc0001478.1_g000006.1 13 IADERSRRITFQKRKKGILKKAYEFSTLCGVDMCLIIYGPKQ 54 789999*********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MGRGGGKLNM QLIADERSRR ITFQKRKKGI LKKAYEFSTL CGVDMCLIIY GPKQSDRRPT 60 ELHTWPQNPD EVNRIIDKFK LNNKPATKTY NLSDWLHEQK AKMDAKISKL RSDMYEAKYP 120 TWDDRINDFS EHQLEELVHV LDQKIESGKR TLHNVRAPPK LLLGGSHVAD VTSQKLSNHM 180 QDYAHYLGEY EDQKPSYVSM MDMQMPFSID QPTSYSQTLQ YDSDLNSMMT NPLMGYPSTY 240 YDPSGVSQMI QSPAENNPNM MMFNSVPSSS VSHYAQLIQK PMSYTQYPMN ISTISSQLGT 300 SQVKDREDDD LFHNKMRRLL DEGQGSDGLV CSQVESLAMR LQRCPEPATS ISTDLDHCPE 360 RSEMPPASVR QAAVAA

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MGRGGGKLNM QLIADERSRR ITFQKRKKGI LKKAYEFSTL CGVDMCLIIY GPKQSDRRPT  60
ELHTWPQNPD EVNRIIDKFK LNNKPATKTY NLSDWLHEQK AKMDAKISKL RSDMYEAKYP  120
TWDDRINDFS EHQLEELVHV LDQKIESGKR TLHNVRAPPK LLLGGSHVAD VTSQKLSNHM  180
QDYAHYLGEY EDQKPSYVSM MDMQMPFSID QPTSYSQTLQ YDSDLNSMMT NPLMGYPSTY  240
YDPSGVSQMI QSPAENNPNM MMFNSVPSSS VSHYAQLIQK PMSYTQYPMN ISTISSQLGT  300
SQVKDREDDD LFHNKMRRLL DEGQGSDGLV CSQVESLAMR LQRCPEPATS ISTDLDHCPE  360
RSEMPPASVR QAAVAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	28	RSRRITFQKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-22	M-type_MADS family protein