PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001465.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 666aa    MW: 73276.8 Da    PI: 7.0183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001465.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.36.8e-1042996662374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++ L+e+A a+s+g+ e+a ++L+rl +  +p+ ++ qRl  +++ AL++r++     + +  p+se     ++e++ +++ ++
  Rmu_sc0001465.1_g000012.1 299 KQSLMEAASAISEGKSEAAAEILTRLTQVTNPRPNSEQRLLEFMASALKSRVNP----VDNPPPVSELF---TQEHAGSTQSLY 375
                                578**************************************************9....44444444444...899999****** PP

                       GRAS  86 evsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164
                                e+ P++++++++aN aIlea+  +    ++vH+iDfdi+qG Q+  Ll+aL+ Rp+g+   ++iT+v +  +g +++l++++++
  Rmu_sc0001465.1_g000012.1 376 ELIPCFNLGFVAANLAILEATLADqsttNKVHVIDFDIGQGCQYRHLLRALSRRPNGKSsVVKITTVPD--NGGEDRLRSVRQN 457
                                ********************8655557799*************************6655499*****99..77*********** PP

                       GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                                L+++A++ gv +efnv v+++l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++
  Rmu_sc0001465.1_g000012.1 458 LSQMAKNWGVGLEFNV-VSQKLSELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNT 540
                                ***************9.8****************************************************************** PP

                       GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                n+++F++r+ e++ yy al+ds+ea  ++++ +r+k E++ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  ++s++
  Rmu_sc0001465.1_g000012.1 541 NTAPFMARVNESCAYYGALMDSVEAV-ANDHPDRVKAEEA-LSRKLANSVACEGRDRVERCEVFGKWRARMGMAGFELRRMSQS 622
                                ***********************998.7999*********.******************************************* PP

                       GRAS 333 aakqa.klllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++++  + l +      g++v+ee+g++++gWk+r+L+++SaWr
  Rmu_sc0001465.1_g000012.1 623 VTESLgNGLFSGNRvHPGFTVKEENGAVCFGWKSRTLTVASAWR 666
                                99887245677777889**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    
MQSGFNSGNQ GLPDFYAGGG RSIGSTMSNH PSQPQYQRSQ LPGLFMDPTG PQIGRQTQNP  60
HHNTAGLIGK RTLAEFQYHQ HQNPYQQNLT NQQNIYLRSL KPKTTANYQH SNFQHASPIS  120
PLSPIDFSSA SSYIGSENSN TSSTTSSMLS QRCRLPLLQQ LRPQTVINPM FQASSSPYVN  180
HSNTVQPLQN QIVQNRVPVS AIESEKKMNN PVSSVDSEKK MIDHRLQELE KQLLDDNDEE  240
EEGGDAVSVI TKTNSEWSET IQNLIGPNQT TQKPVSPSPT SSSSSSSSVA SPATLTCSKQ  300
SLMEAASAIS EGKSEAAAEI LTRLTQVTNP RPNSEQRLLE FMASALKSRV NPVDNPPPVS  360
ELFTQEHAGS TQSLYELIPC FNLGFVAANL AILEATLADQ STTNKVHVID FDIGQGCQYR  420
HLLRALSRRP NGKSSVVKIT TVPDNGGEDR LRSVRQNLSQ MAKNWGVGLE FNVVSQKLSE  480
LNRESLGCEP DEPIAVNFAF KLYSMPDESV STDNPRDELL RRVKGLAPRV VTLVEQELNT  540
NTAPFMARVN ESCAYYGALM DSVEAVANDH PDRVKAEEAL SRKLANSVAC EGRDRVERCE  600
VFGKWRARMG MAGFELRRMS QSVTESLGNG LFSGNRVHPG FTVKEENGAV CFGWKSRTLT  660
VASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-162GRAS family protein