PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001460.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 328aa    MW: 36174.7 Da    PI: 4.8093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001460.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.8e-10145187855
                                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 ErrRR r+++++  Lr+l+P+      +K++Ka+i   Av Y+++L+
  Rmu_sc0001460.1_g000020.1 145 SERRRRGRMKEKLYALRSLVPNI-----TKMDKASIIGDAVLYVQDLE 187
                                6*********************7.....7****************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MDGMGASGNH DLRGHSVIND FELQDFVDDA NFDQFIDLIR GENEDPAAQF NLDLTCSGSF  60
FDNQLCPTTD TVSFFGFDHN LTILCDPPPF LTTLPSFGGE MNDIGEEDND GGDSCGTTTT  120
TTTTTTTTAT TTKKPKVDRS RTLVSERRRR GRMKEKLYAL RSLVPNITKM DKASIIGDAV  180
LYVQDLEKQA KKLRAEILGL EASLEGSEEN QGSPQNPTKN KLVTDNYHLI PKGTIQIDVS  240
QVKEKGFHVK VGCNRGVGVA TALYKAIESL TSFTVQSSNL NMVNSKRFEI TLALNVKECE  300
HEIMNLPNLK LWVTGAFLNQ GFELATIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-59bHLH family protein