PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001405.1_g000029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 33232.7 Da PI: 8.7919 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 36 | 86 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Rmu_sc0001405.1_g000029.1 36 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 86 589******.7*********43...36**************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MAGPELTKTT IATATTTATK AMSKSSTSSA KAALRRFVGV RQRPSGRWVA EIKDSSQRVR 60 LWLGTYDTPE EAARAYDEAA RALRGENART NFATPVANPD NNLSLLANSC PNPNGTFMPS 120 GLSDGRRSGG QGLSFSSLKA KLSKNLQSIM ARSSDHHNKS SKSRVSDHFT FASIFHFRKY 180 QQYQNNPVNP LFDMKNIEKV VQPSIIVPHA GETSTSTSTD PSSWESSSIS DCSDWGYSFR 240 QPGMDSDGSD LGDGFMDQIM GWMDSPDQMS SGTVGDDCEE GSRSKRFKVS SSVMVPSTFA 300 GSPYNN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-16 | ERF family protein |