PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001228.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 593aa MW: 65342.6 Da PI: 8.6658

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001228.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.7	1.9e-20	400	449	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f taeeAa+a+++a+ +++g Rmu_sc0001228.1_g000009.1 400 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFHTAEEAARAYDKAAIEFRG 449 59*****.******82....48**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MKAEACGSGF NSMVAALRDF VLLVDRVVKE RVIVVNVGDA RGRVHPFLVE CPNHFAGPKQ 60 FGAAAGFVFK DSTREPILAT SNFVAAHDVL LMEALALRAS LHAEWLHGFS NIEVRNISRS 120 QSATYDNLQE SCKPPREPHS PLLKSKSHCT PKAYIYAPKT ALTPKHTSNS KLFPPQQQQT 180 FNSRASPQHA KLLLSDSQRL PIQSFSHHNN NKPSTAELLH SMQNSFNRSK LDTAGDPQQL 240 TQNPLPPPPR RLTQEQELAV IVSALRNVVA GTTTTMDFNS LFPSYHYPAA ASSSSSPALF 300 EAPRRLTQEQ ELAVIVSALR NVVAGTTTAM DFNSLFPSYH YPAAASSSSS PALFEASDAE 360 TCPVCKIQGC LGCNFFPPAQ EENSNNNNNK KAPKKRLKKN YRGVRQRPWG KWAAEIRDPR 420 RATRVWLGTF HTAEEAARAY DKAAIEFRGP RAKLNFPFPD NSLSMNQETS TPPTQSIQEP 480 QKQQIVVTDT KQENKSEDSN GMECEFWERI GEDELFQQWM MTMDYAPDHS SDSGNGLKVS 540 MRIGRPPDIR LKVVTSAGCL LPYHLGGSIA GRSHPSSVGL VNGSVDYDGG DLG

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MKAEACGSGF NSMVAALRDF VLLVDRVVKE RVIVVNVGDA RGRVHPFLVE CPNHFAGPKQ  60
FGAAAGFVFK DSTREPILAT SNFVAAHDVL LMEALALRAS LHAEWLHGFS NIEVRNISRS  120
QSATYDNLQE SCKPPREPHS PLLKSKSHCT PKAYIYAPKT ALTPKHTSNS KLFPPQQQQT  180
FNSRASPQHA KLLLSDSQRL PIQSFSHHNN NKPSTAELLH SMQNSFNRSK LDTAGDPQQL  240
TQNPLPPPPR RLTQEQELAV IVSALRNVVA GTTTTMDFNS LFPSYHYPAA ASSSSSPALF  300
EAPRRLTQEQ ELAVIVSALR NVVAGTTTAM DFNSLFPSYH YPAAASSSSS PALFEASDAE  360
TCPVCKIQGC LGCNFFPPAQ EENSNNNNNK KAPKKRLKKN YRGVRQRPWG KWAAEIRDPR  420
RATRVWLGTF HTAEEAARAY DKAAIEFRGP RAKLNFPFPD NSLSMNQETS TPPTQSIQEP  480
QKQQIVVTDT KQENKSEDSN GMECEFWERI GEDELFQQWM MTMDYAPDHS SDSGNGLKVS  540
MRIGRPPDIR LKVVTSAGCL LPYHLGGSIA GRSHPSSVGL VNGSVDYDGG DLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	1e-32	ERF family protein