PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0001211.1_g000005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 25335.1 Da PI: 5.0543 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W + Ed++ +d+vk++G g W + +r+ g++R++k++++rw++yl Rmu_sc0001211.1_g000005.1 16 KGAWAASEDQIVIDYVKKHGVGKWGKLSRETGLKRCGKSVRLRWLNYL 63 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 29.3 | 2e-09 | 69 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+el+++++k+lG++ ++ gRt++++k++w++ Rmu_sc0001211.1_g000005.1 69 RGNITEDEEELIIRLHKLLGNR--------IP-GRTDNEIKNYWNSC 106 7999****************99........**.***********975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence |
MGESSTCYDK NEGPKKGAWA ASEDQIVIDY VKKHGVGKWG KLSRETGLKR CGKSVRLRWL 60 NYLRPGIVRG NITEDEEELI IRLHKLLGNR IPGRTDNEIK NYWNSCLKRK LQQQNHLAVP 120 RNEEIREDLS SSAAVAAAAE KNPHLTGNNV NEDEDYHQHH DVDFGVGIEF EATDNNNGTG 180 DDEHLRDDLW WNNFIMDLND IQLDASEFQP DFPEIRLGNL W |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 5e-44 | MYB family protein |