PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001122.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21088.6 Da PI: 5.1453 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.4e-19 | 98 | 148 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ g+W+AeIrdp+ r r++lg+f t+eeAa+a++ +++++g Rmu_sc0001122.1_g000006.1 98 SKYRGVRQRP-GGKWAAEIRDPR----RaVRVWLGTFQTEEEAARAYDTKALQFRG 148 89********.9*********82....48***********************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MKSSGSKMPK EQEHAIIVST LKRVIRGGVG TDNAPSQPPP PSTQLPATGD TDQVVIPFSD 60 CDDTCQVCKM GKDDCLGCGL FPPSEQELQD KGKKVKTSKY RGVRQRPGGK WAAEIRDPRR 120 AVRVWLGTFQ TEEEAARAYD TKALQFRGAD RAKLNFPPSW DTGTTSGAMA DETKVQTSPV 180 GESSAAEDEE EMDP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-26 | ERF family protein |