PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001120.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34019.2 Da PI: 9.1339 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.4e-18 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l ++q+G g+W++ +++ g+ R++k+c++rw++yl Rmu_sc0001120.1_g000006.1 19 RGPWTPQEDKKLFAFIQQHGHGSWRSLPKKAGLQRCGKSCRLRWRNYL 66 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed+ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l Rmu_sc0001120.1_g000006.1 72 RGNFSLQEDQTIIQLHALLGNR-WSAIAANLP-RRTDNEIKNYWNTHL 117 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MGKSRTLTNS TATTSEIKRG PWTPQEDKKL FAFIQQHGHG SWRSLPKKAG LQRCGKSCRL 60 RWRNYLNPAI KRGNFSLQED QTIIQLHALL GNRWSAIAAN LPRRTDNEIK NYWNTHLKKR 120 LAKTGFDPVT HKPKTAILAS ANGDPKNLSN LSHIAQWESA RLQAEARFVR QSKLIKPAPP 180 APQYLDFNLR TWETLMMSKS LAAGGGGGDE AGGDGRATNV VQEVGSFCNF DGVLGNNGRQ 240 FEVPKLTIPA APDFNEVSEE SGTDEYGDLF EALLLQQSYT NTGFDVVDAW TLEQCNDISA 300 DYQNVI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 4e-88 | MYB family protein |