PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001097.1_g000006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 474aa    MW: 53735.7 Da    PI: 8.2916
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001097.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-31959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Rmu_sc0001097.1_g000006.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                               79***********************************************96 PP

2K-box96.15.4e-328317310100
                      K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                                 +++ es+++e+ kLk + e+Lqr+qR+llGedL++L+ keL+qLe+qLe+slk++Rs+K++ +l+q+++lq ke++l e+n++
  Rmu_sc0001097.1_g000006.1  83 PAKELESSYREYLKLKTRCESLQRTQRNLLGEDLGPLNTKELEQLERQLESSLKHVRSTKTQSMLDQLSDLQSKEHMLIEANRD 166
                                5677999***************************************************************************** PP

                      K-box  94 Lrkklee 100
                                L++kl+e
  Rmu_sc0001097.1_g000006.1 167 LTMKLDE 173
                                ****986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSILKTLERY QKCSYGAMEV NEPAKELESS YREYLKLKTR CESLQRTQRN LLGEDLGPLN  120
TKELEQLERQ LESSLKHVRS TKTQSMLDQL SDLQSKEHML IEANRDLTMK LDEINSGTQL  180
RQTWERGHAH QTMLYGTQHA QTQGLMFQPL DCNPTLQIGY NAVGSQQMTA ATPAPTQPVN  240
GFIPATGLAQ REVTLVEDLI VETGVWDEGK ILRLFSLEEA EAIINIPLSR RVLDSRRVQL  300
ESLICVLCET NQESTLHLCK DCAFTQRVLQ SNMVLRQVCY GPQHEGRDLL QWLAACAAEL  360
SPTSFGDFLF LLYGIWKERN DRVWDQKKGD ASDVVIRTMS RLQEYRFHTL HNGEGKIRRS  420
RMVRWVAPPV GFLKINVDGA FDHVTRKGGA GFVIRNELGV MLAGGACPLT GLLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-105MIKC_MADS family protein