PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001097.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23466.8 Da PI: 10.125 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ Rmu_sc0001097.1_g000003.1 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 80 | 5.7e-27 | 60 | 126 | 34 | 100 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 R++ GedL++Lsl+eLq+Leqq++++lk++R++Kn++++e+i+e+qkk + lqe+n++L kkl+e Rmu_sc0001097.1_g000003.1 60 DSRNYTGEDLDPLSLRELQSLEQQIDTALKRVRARKNQVMHESISEMQKKHRTLQEQNNSLAKKLKE 126 57**************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence |
MGRGKVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD 60 SRNYTGEDLD PLSLRELQSL EQQIDTALKR VRARKNQVMH ESISEMQKKH RTLQEQNNSL 120 AKKLKENEKL LQEEPNNNQQ PNPSTLVLMP PLQATSPPAL LSSLTIGGAF QGRGDAMDED 180 AEDHQGSAQT RPASNTLMPP WMVRHLNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 4e-53 | MIKC_MADS family protein |