PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001066.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 338aa MW: 37934.2 Da PI: 8.916

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001066.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	159	206	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK +Ka++L ++YIk+Lq Rmu_sc0001066.1_g000012.1 159 QDHIIAERKRREKLSQRFIALSAMVPGL-----KKTDKASVLGDSIKYIKQLQ 206 6799**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MEISSIRGLT ELGMEDPFFV NQWHMNSLDE LSMLPLSAAF GENLQQSHCH PILNPKSSTN 60 TSLSSIDRPM KQLKPNNWNP SNHQFASLPN LLSFVNSYNT NQVGVVKPKE ETAVRSKNIN 120 HFPSDILVSQ GSFGNQNSSL KASQGTNRIN TNTRLSQTQD HIIAERKRRE KLSQRFIALS 180 AMVPGLKKTD KASVLGDSIK YIKQLQEKVK TLEEQTRVKK MESVVSVKRS QLNIANDDNS 240 SSDDNTSSVS FEETLPEIEA RFCDNNVLIR VHCMKRKGVV EKTIAEVEKL QLKLINSSVM 300 TFGSSVLDVT IVAQMEVEFC LSVKDVVKNL RSAFDLFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	ERKRRE
2	166	171	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-61	bHLH family protein