PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0001038.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 146aa MW: 16721.8 Da PI: 9.657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 20 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + r +lg+f ta+eAa+a+++a+ +++g Rmu_sc0001038.1_g000002.1 20 KYRGVRRRP-WGKFAAEIRDSTR---QgVRLWLGTFNTAKEAARAYDKAAFSMRG 70 8********.**********322...24*************************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence |
MKEGPSKSNK IEDERQKYVK YRGVRRRPWG KFAAEIRDST RQGVRLWLGT FNTAKEAARA 60 YDKAAFSMRG PLAILNFPSE HGFVYADSAA TSSSFTASSS TLHNMEVTMR TEPRKEVFVF 120 EYLDDKVLEE LLDFENNSKR VELGVQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23230.1 | 8e-31 | ERF family protein |