PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001036.1_g000026.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 704aa MW: 80797.9 Da PI: 8.4053

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001036.1_g000026.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.9	8.2e-24	119	206	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 kfYn+Y+ + GF+vr+++s+k+ ++ +t+ +++Cskeg+r ++k++ ++++ ++++tr+gC+a+l+++++k+g+++v ++e++ Rmu_sc0001036.1_g000026.1 119 KFYNNYGGKHGFNVRIRNSRKN-IENFVTWVRYCCSKEGFRIKDKRR-TNASYSQPVTRCGCQAHLTIQLQKNGNFKVVSFEKN 200 6****************999.6666************9999.99999*************************** PP FAR1 85 HnHela 90 HnH+l Rmu_sc0001036.1_g000026.1 201 HNHPLI 206 **96 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MSVGIVMVIG GGDGVGIRIR VLMGLEVGLS LVGMDLKGGG DAVVAEVEVS GFGLMDNANC 60 TSLGNQPTSN TKDLQGKEQC DHSHCEPTDD LHVVNENNEE AIEEVILGKE FMDVESASKF 120 YNNYGGKHGF NVRIRNSRKN IENFVTWVRY CCSKEGFRIK DKRRTNASYS QPVTRCGCQA 180 HLTIQLQKNG NFKVVSFEKN HNHPLISTPM KHLLKVNRNI SEAQKAHADD VECSGFSIKA 240 TVELMSREVG GPEYLGFSHK DYMNYIHRKR MSKMEKGDAG AILQYFQKMQ SENSSYFYSI 300 QLDEDDMITN IFWADARSNL SHVFHGSSEF VEDFSNCMYD YEFEHEWLLA WNDMLEKYSL 360 KENKWLNNLF ELREKWALVY GRHTFTVDMK STQHSECMNN VLKKYLRPEH NLLRFFEHYE 420 RVLADRRYEE LIAEYKMIQT TPVLAVSAHM LQHAAEVYTP KVFLLFQKEF VRIHNYSTYK 480 VGKSGSTSEY IVSYSSEHNE HLVRYEDSAQ NVDCSCKKFT FVGILCVHAL KVLDKKNVKK 540 IPPQYILKRW TREAKIMSIT SYHGNEVHGN PKESIGKRYG YLCRTSRDIL TVAADDEELT 600 RYAHECLVEM LKGLELIKKN RNEKEGRSSG HSSQDKTTFE SEEVEGIVQS NACETTIVRG 660 VKRKATIGRP RTRFKDPAEK KKSKAPKKST KAPTKRKIPM QVQF

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MSVGIVMVIG GGDGVGIRIR VLMGLEVGLS LVGMDLKGGG DAVVAEVEVS GFGLMDNANC  60
TSLGNQPTSN TKDLQGKEQC DHSHCEPTDD LHVVNENNEE AIEEVILGKE FMDVESASKF  120
YNNYGGKHGF NVRIRNSRKN IENFVTWVRY CCSKEGFRIK DKRRTNASYS QPVTRCGCQA  180
HLTIQLQKNG NFKVVSFEKN HNHPLISTPM KHLLKVNRNI SEAQKAHADD VECSGFSIKA  240
TVELMSREVG GPEYLGFSHK DYMNYIHRKR MSKMEKGDAG AILQYFQKMQ SENSSYFYSI  300
QLDEDDMITN IFWADARSNL SHVFHGSSEF VEDFSNCMYD YEFEHEWLLA WNDMLEKYSL  360
KENKWLNNLF ELREKWALVY GRHTFTVDMK STQHSECMNN VLKKYLRPEH NLLRFFEHYE  420
RVLADRRYEE LIAEYKMIQT TPVLAVSAHM LQHAAEVYTP KVFLLFQKEF VRIHNYSTYK  480
VGKSGSTSEY IVSYSSEHNE HLVRYEDSAQ NVDCSCKKFT FVGILCVHAL KVLDKKNVKK  540
IPPQYILKRW TREAKIMSIT SYHGNEVHGN PKESIGKRYG YLCRTSRDIL TVAADDEELT  600
RYAHECLVEM LKGLELIKKN RNEKEGRSSG HSSQDKTTFE SEEVEGIVQS NACETTIVRG  660
VKRKATIGRP RTRFKDPAEK KKSKAPKKST KAPTKRKIPM QVQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-46	FAR1 family protein