PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000998.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 542aa MW: 62405.4 Da PI: 8.9531

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000998.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.5e-21	34	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fYn+YAke+GFs+r +++ ++k+n++ +++++vC+k+g+++ e +k r+r ++gCka++ ++k + ++ + +++ Rmu_sc0000998.1_g000003.1 34 FYNRYAKEAGFSIRSHSTATNKDNTQLMRKEYVCYKQGTSKVEGEK-----RKRGLPKVGCKARIAAMRKKkSRRYAIFVFVEG 112 9************************************9998877.....999*******98777769******* PP FAR1 85 HnHela 90 HnH+l+ Rmu_sc0000998.1_g000003.1 113 HNHPLT 118 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MESKDDHIYI PQVKAELMPI LHQEFETIDD VAAFYNRYAK EAGFSIRSHS TATNKDNTQL 60 MRKEYVCYKQ GTSKVEGEKR KRGLPKVGCK ARIAAMRKKK SRRYAIFVFV EGHNHPLTNP 120 PRVHLLRSHR RVSKVNTVLS QQLSLVNVQK HTQFEFFGVQ AGGIENIGCT QRDLYNYGRT 180 CCEAKKGHDG DLLYMHFQNE KEKDPSFVYT MESDEENRVT MCFWADSISR RAYSFYGDVV 240 KKGLLHQHHY ELEEDHINID EKPKTVMSLD IEDHMAKVYT CKLFYEVQEQ LKEGFKYKLE 300 LLRENATHCV FKVMRKNIDT CKSRELTYEK ASDFTSCSCR KFESEGLPCR HVLSYLIKIQ 360 DVDKLPIQYI LKRWTKAARQ SFVLDSDGME VKDKKALLAR RTKLFQHATD AIDKAMVSNE 420 ASQLFMECLD AFLENIKTLF GNESGQSVVV LETKIDAIQH IFNEPNQVRA KGCGKRLKKR 480 KEKRKVKVKE SQGRQCHGCG LLGQSHDKRN CLTLHGKPAI NKDGESSSSS MDEDGCSSTG 540 EL

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MESKDDHIYI PQVKAELMPI LHQEFETIDD VAAFYNRYAK EAGFSIRSHS TATNKDNTQL  60
MRKEYVCYKQ GTSKVEGEKR KRGLPKVGCK ARIAAMRKKK SRRYAIFVFV EGHNHPLTNP  120
PRVHLLRSHR RVSKVNTVLS QQLSLVNVQK HTQFEFFGVQ AGGIENIGCT QRDLYNYGRT  180
CCEAKKGHDG DLLYMHFQNE KEKDPSFVYT MESDEENRVT MCFWADSISR RAYSFYGDVV  240
KKGLLHQHHY ELEEDHINID EKPKTVMSLD IEDHMAKVYT CKLFYEVQEQ LKEGFKYKLE  300
LLRENATHCV FKVMRKNIDT CKSRELTYEK ASDFTSCSCR KFESEGLPCR HVLSYLIKIQ  360
DVDKLPIQYI LKRWTKAARQ SFVLDSDGME VKDKKALLAR RTKLFQHATD AIDKAMVSNE  420
ASQLFMECLD AFLENIKTLF GNESGQSVVV LETKIDAIQH IFNEPNQVRA KGCGKRLKKR  480
KEKRKVKVKE SQGRQCHGCG LLGQSHDKRN CLTLHGKPAI NKDGESSSSS MDEDGCSSTG  540
EL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	100	KRKRGLPKVGCKARIAAMRKKK
2	80	101	KRKRGLPKVGCKARIAAMRKKK
3	96	103	MRKKKSRR
4	475	481	KRLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-27	FAR1 family protein