PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000894.1_g000068.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 291aa    MW: 33090.8 Da    PI: 8.2008
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000894.1_g000068.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.82e-0933844191
                       FAR1 41 reeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                               + ++ +++++   +r++tr+gC a+l+v + k +g ++v++++++HnH l+p
  Rmu_sc0000894.1_g000068.1 33 APSQVTNNVQPAIKRKVTRCGCPARLTVIRCKiTGYFYVSQFDTDHNHVLVP 84
                               44445556888889****************999***************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MDSDTEQHGL RFSEAQYHQS GRISNEEDVY GSAPSQVTNN VQPAIKRKVT RCGCPARLTV  60
IRCKITGYFY VSQFDTDHNH VLVPKEMVHF LRSNRMVGEH ASAQVSSLKK VSVLTCRAYD  120
LLVHQAGAYT YIGFKLKDLY NQQDSERREL LVGGDAQAGI SFMNLKASRD PHFYCYFCVD  180
QEGRLANLFW RDSKCLVDYN NFGDVLIMDS TYKTNMYGKP LVVFVGVNNH RATVLFGCAL  240
LVDKTKETFK WVVSTFISSM DGKKLISVIT DQDDSMRNAI VEVILEARYR L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-47FAR1 family protein