PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0000882.1_g000025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 492aa MW: 55012.9 Da PI: 5.1313 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.4 | 6.4e-35 | 17 | 108 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+y++++d++++ l+sw++ +nsfvv++ +fa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ Rmu_sc0000882.1_g000025.1 17 FLNKTYDMVDDPSTDYLVSWTDANNSFVVWNDAQFARDLLPKFFKHNNFSSFVRQLNTYGFRKVHPDR---------WEFANEG 91 9****************************************************************999.........******* PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F +g+k+ll++++r+k Rmu_sc0000882.1_g000025.1 92 FLRGQKHLLKTVNRRKP 108 **************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 492 aa Download sequence |
MEDAAAMINS ATSIPPFLNK TYDMVDDPST DYLVSWTDAN NSFVVWNDAQ FARDLLPKFF 60 KHNNFSSFVR QLNTYGFRKV HPDRWEFANE GFLRGQKHLL KTVNRRKPVN VQSHQQSAPV 120 PAPKVKSSQV AACVEVGKLG LEEEVERLKR DKNTLMQELI SLRQEQQATD NQLQNVGQRV 180 QGMEQRQKQM MSFLAKAMHS PGFLSQLVQH QNESNRRITG SNKKRRLPRQ EDEILVGKLS 240 SKTLDGQIVK YQPSMNEAAK AMLRQIMKMN ISPRREPSMN NPDAFLIDNV PSSNVLDSRN 300 CSRNLGVTLS EVSPTYMTAE SGFPGTCHSR ATSQVQPSPS VATDCVTATQ ISEENIYNLQ 360 EDTVLPELTA MQGIAPPSTV EIPNANFMPS ETVNTEYMDV SVLDQAMPTK TEVFSPEINP 420 DADVSQDGEP NLPGINDVFW DKFFDTDEID LSSVVGVTKD QEMQSGKGNG WDKIQHISPI 480 APQQTGLEGM IG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-125 | HSF family protein |