PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000800.1_g000024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 26862.5 Da PI: 8.0923 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.6 | 1.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe +r+ +++sl++eA+ r+ +Pv+Gavg+ Rmu_sc0000800.1_g000024.1 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPEPQRPVLFQSLLFEACGRTVNPVNGAVGL 85 6*********************************************************************************** PP DUF260 80 ilklqqqleqlkaelall 97 ++++++q++q+++e++l+ Rmu_sc0000800.1_g000024.1 86 LWTGNWQVCQAAVETVLR 103 ************999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPEPQR 60 PVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WQVCQAAVET VLRGGTLRPI PELVSGSGSG 120 LTPDEASEAD GTACTDMWRL RDPTHNSGSS SRFTNSRSKA ASCSPTTKRK RPDDESFKVL 180 QHADLDLRLT PTLLAFRPKP KPETRRPGSP SMNSEESVVT TCFESAGFAE QYPNPNGGSE 240 IKLLSLFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-85 | LBD family protein |