PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000730.1_g000023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 38373.3 Da PI: 6.6784 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.2e-17 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Rmu_sc0000730.1_g000023.1 29 RGPWTVEEDVALMNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 76 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Rmu_sc0000730.1_g000023.1 82 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 125 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence |
MDVKPGRVSD IIRNSSEEDE DAMMMDLRRG PWTVEEDVAL MNYIANHGEG RWNSLARCAG 60 LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHSRW GNRWSKIAQH LPGRTDNEIK 120 NYWRTRVQKH AKQLKCDVNS KQFKDTMRYL WMPRLVERIQ AAASAATAPT GASSSITAAA 180 VNTYHFNNNN NSFQAPAGAG HVALQQATLI GNNNDLAGSY TTPENSSTAA SSDSFGTQVS 240 PVSELTDYYS NMSVNNNKPS SQALDYFQAT NPHHQVGYHD SMTSPSGYSF NQGGLNSHSF 300 QAASAPEQNN NGQWSMDGGD FSDNLWNVEE SDMWFLQQQL GNI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 3e-92 | MYB family protein |