PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000645.1_g000016.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 748aa MW: 83924.6 Da PI: 5.6035

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000645.1_g000016.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.8	3.1e-12	368	392	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCk+G++CkF+H++ Rmu_sc0000645.1_g000016.1 368 KPICEYYLKTGTCKFGPSCKFHHPK 392 689********************96 PP
2	zf-CCCH	17.3	8.8e-06	443	468	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG k+ ++C+++H++ Rmu_sc0000645.1_g000016.1 443 REPECQYYLRTGDYKFVPSCRYHHPR 468 789*********************96 PP
3	WRKY	82.9	3.2e-26	637	695	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K k+s++pr+YY+C+++gCpvkk+ver+ +dp+ v++ Y+g Hnh+ Rmu_sc0000645.1_g000016.1 637 LDDGFKWRKYGKKFGKNSTNPRNYYKCAYEGCPVKKRVERDGQDPSHVITCYNGVHNHT 695 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MRNVQENLLL ARNHSDKQDL DKKMSELLKV HQEVLKAQKE MFDMMRVQHE AVHEAMQRIR 60 ADAVQNVQGE TAPALLEFKS TLDFLKPLIE EMAESNKLLH LPEQEQEKFI IQMREGVELI 120 DKCSKIAIHV KEGLISISSM EAMIKKIEES GVIQNQSQVV LTKPQPPLHE AGLDVLDTHG 180 SKDVEGTGDD LNEKDVGVKQ IGRDGTRQNE KEIEGPAGCG KTTLARMFCE DQEVKMKFKN 240 IFFVHVSENP SLDFIVQQLY EQKDSVVLEL QEDAVNWLQQ FLKETGGDPS LLVLDDVWSG 300 SESLLDKFDG LRTSMHKILV TSRSEFPRFD CYLENLKSLD DEEEMAHLKG KVVAAVRATG 360 DYPERVGKPI CEYYLKTGTC KFGPSCKFHH PKQGIGYLSS LYGLAQLSSP THALERPYTS 420 VVPSSVGPSS SSPNEQAFPE RPREPECQYY LRTGDYKFVP SCRYHHPRDQ IAPRTNCLLS 480 PVGLLGNSGS NAWPSFSQVS LSMEDFQTSL DLKLNAQHSL LQTPMSPCVS ISRRISSNDK 540 SSQSDVEDKS ELDEIQSQIS GVTVPESLHD PLESKDQCPM NVNNTLEYAA SGTTPNSVNV 600 DGQSVTCNSI GEIGSISQKQ GVKEKVAFRT KSEIEILDDG FKWRKYGKKF GKNSTNPRNY 660 YKCAYEGCPV KKRVERDGQD PSHVITCYNG VHNHTSLGKR TQRVPASHPQ PLPFPLPIGK 720 EESFTFDHLA DDNQEESVLF DHLADHIQ

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MRNVQENLLL ARNHSDKQDL DKKMSELLKV HQEVLKAQKE MFDMMRVQHE AVHEAMQRIR  60
ADAVQNVQGE TAPALLEFKS TLDFLKPLIE EMAESNKLLH LPEQEQEKFI IQMREGVELI  120
DKCSKIAIHV KEGLISISSM EAMIKKIEES GVIQNQSQVV LTKPQPPLHE AGLDVLDTHG  180
SKDVEGTGDD LNEKDVGVKQ IGRDGTRQNE KEIEGPAGCG KTTLARMFCE DQEVKMKFKN  240
IFFVHVSENP SLDFIVQQLY EQKDSVVLEL QEDAVNWLQQ FLKETGGDPS LLVLDDVWSG  300
SESLLDKFDG LRTSMHKILV TSRSEFPRFD CYLENLKSLD DEEEMAHLKG KVVAAVRATG  360
DYPERVGKPI CEYYLKTGTC KFGPSCKFHH PKQGIGYLSS LYGLAQLSSP THALERPYTS  420
VVPSSVGPSS SSPNEQAFPE RPREPECQYY LRTGDYKFVP SCRYHHPRDQ IAPRTNCLLS  480
PVGLLGNSGS NAWPSFSQVS LSMEDFQTSL DLKLNAQHSL LQTPMSPCVS ISRRISSNDK  540
SSQSDVEDKS ELDEIQSQIS GVTVPESLHD PLESKDQCPM NVNNTLEYAA SGTTPNSVNV  600
DGQSVTCNSI GEIGSISQKQ GVKEKVAFRT KSEIEILDDG FKWRKYGKKF GKNSTNPRNY  660
YKCAYEGCPV KKRVERDGQD PSHVITCYNG VHNHTSLGKR TQRVPASHPQ PLPFPLPIGK  720
EESFTFDHLA DDNQEESVLF DHLADHIQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	3e-34	WRKY family protein