PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000639.1_g000022.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 389aa MW: 43302.2 Da PI: 6.24

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000639.1_g000022.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.1	6.4e-07	21	65	2	40
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r C+ ++ + l+C+ ++ lC +C e H+ Ht++ Rmu_sc0000639.1_g000022.1 21 KKRLCDYCGVSMALLYCRADSAKLCFSCDKEVHSAnqlfikHTRS 65 6789***988*******************668899999876 PP
2	zf-B_box	30.2	9e-10	65	108	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ ++e ++++fC + ++ lC++C e H + H+++p Rmu_sc0000639.1_g000022.1 65 SQLCDACDEAPASIFCSTESSVLCQNCDWERH-NlssatvHDRRP 108 678*****************************.558888888776 PP
3	CCT	64.4	3.3e-22	345	387	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Re al+RYkeK+ktR+++K+irYesRK++AesR R+KGrF+k Rmu_sc0000639.1_g000022.1 345 RESALSRYKEKKKTRRYDKHIRYESRKVRAESRTRIKGRFAKI 387 99***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MNGFKEEDEP GHQNMGQRKK KKRLCDYCGV SMALLYCRAD SAKLCFSCDK EVHSANQLFI 60 KHTRSQLCDA CDEAPASIFC STESSVLCQN CDWERHNLSS ATVHDRRPVE GFTGNPGLNE 120 LLAFVGFENL DKKGLVVSEE SSGAGGGFDG SGLDGSLGLS EGFSDFLVWE TPSVVSLDDL 180 IVSSPAHKFQ AMGVPPLPKN RNAKCGRHKE EILSQLRVVA KSEPNLMNED VDLNCFMRFQ 240 SPETEHNMQS GGFLTNFEQD AEPLAFPAYE AQESEANHYD KSSSQDFFPK TLQRSYLQDC 300 SMVPDLNSNN DGTASHASDG FGGQMNAEAS SAFPKVPSHE CTLNRESALS RYKEKKKTRR 360 YDKHIRYESR KVRAESRTRI KGRFAKIDN

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MNGFKEEDEP GHQNMGQRKK KKRLCDYCGV SMALLYCRAD SAKLCFSCDK EVHSANQLFI  60
KHTRSQLCDA CDEAPASIFC STESSVLCQN CDWERHNLSS ATVHDRRPVE GFTGNPGLNE  120
LLAFVGFENL DKKGLVVSEE SSGAGGGFDG SGLDGSLGLS EGFSDFLVWE TPSVVSLDDL  180
IVSSPAHKFQ AMGVPPLPKN RNAKCGRHKE EILSQLRVVA KSEPNLMNED VDLNCFMRFQ  240
SPETEHNMQS GGFLTNFEQD AEPLAFPAYE AQESEANHYD KSSSQDFFPK TLQRSYLQDC  300
SMVPDLNSNN DGTASHASDG FGGQMNAEAS SAFPKVPSHE CTLNRESALS RYKEKKKTRR  360
YDKHIRYESR KVRAESRTRI KGRFAKIDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	23	RKKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-88	CO-like family protein