PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000627.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22099.3 Da PI: 6.783 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 3e-17 | 58 | 109 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 + ykGVr+++ g+Wv+e r+p g k+ r++lg+f +e+Aa+a++ a+++l+ge Rmu_sc0000627.1_g000006.1 58 PVYKGVRQRS--GKWVCEMRHP---GlKKSRVWLGTFTCPEMAARAYDVAALALKGE 109 68****9865..*********9...9999*************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MLCDASASSL MAYREEPAAP SSPASLLMNL GQTLTHIQSG VTKKRKAGRK KFKETRHPVY 60 KGVRQRSGKW VCEMRHPGLK KSRVWLGTFT CPEMAARAYD VAALALKGES ALLNFPDEAK 120 ASPSSTSSMS FPELTSMVNL EKVEVGSSKG YVDEEELFNM PEILDSMAEG LILTPPALKK 180 GFNWDDYDLE NAVEFSLWSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 5e-28 | ERF family protein |