PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000570.1_g000032.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 781aa MW: 89984.5 Da PI: 8.696

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000570.1_g000032.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	67.4	5e-21	726	774	2	50
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieW 50 + +kd+hsk++T +g+ dR++Rl+a++a++f+d+qd+LG+d++sk ++W Rmu_sc0000570.1_g000032.1 726 TSRKDSHSKVCTTKGPWDRSIRLVAHTAIQFYDMQDRLGYDQPSKVVDW 774 789********************************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence
MVSPIPTSVK NIWEKWNLRG FVLLSLSLQT ILILGAPFRK RSPSLFVTMV IWSSYLLADW 60 AANFAIGLIA NSQGDNPFIP NPNNTGHFNS DLLAFWAPFL LLHLGGPDTI TAFALEDNTL 120 WLRHLFGLVF QVIAAVYVFI QSFPKNKLWL PTVLLFVAGI IKYAERTRAL YLASLDNFKE 180 SMIKKPDPGP NYAKLMEEYS SKKDAKLPTH IELTAERSKD SRTTTYVVDP GDMEHNIALV 240 RHAFHFFNIF KGLIVDLIFS FHERFESRVF FHDRTAEDAF KLVAIELNFI YEALFTKVVV 300 VHSKKGYICR AISFSAVCTA LVCFQKIEKH DFHGFDVGIT YILLFGALAL DSIAVFMLIF 360 SDWTVAAVKK SSQDSCLANI LKRYITLKQS WWFFAENANP YLERCRQLLF RRWYESVSIF 420 NLIHYSLKEC PKPSPNIFDY FCMACLEIIY LMGLKDLRDK IKYRRSKRLE KELWKFIFDQ 480 LKSKSMLADD PETARRISSA RGDWILQDSD WNNYKDCRNL LRYVVDVEFD QSILLWHIAT 540 EFCYNLDMDL KVQEKEPYKA VAVQTAIEHC KILSDYMVYL LVMQPTMMST VAGIGQIRFR 600 DTCAEAIKFF SRRELGPKVT PQEACERILE VNTDVRPVAV KGDRSKSVLF DASILAKELM 660 TLDEKKWKLM SEVWVELLAY AAGHCRANDH VQLLSKGGEL VTFVWTASSS TASEIVEAQG 720 HILRATSRKD SHSKVCTTKG PWDRSIRLVA HTAIQFYDMQ DRLGYDQPSK VVDWPRRTRR 780 T

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence

MVSPIPTSVK NIWEKWNLRG FVLLSLSLQT ILILGAPFRK RSPSLFVTMV IWSSYLLADW  60
AANFAIGLIA NSQGDNPFIP NPNNTGHFNS DLLAFWAPFL LLHLGGPDTI TAFALEDNTL  120
WLRHLFGLVF QVIAAVYVFI QSFPKNKLWL PTVLLFVAGI IKYAERTRAL YLASLDNFKE  180
SMIKKPDPGP NYAKLMEEYS SKKDAKLPTH IELTAERSKD SRTTTYVVDP GDMEHNIALV  240
RHAFHFFNIF KGLIVDLIFS FHERFESRVF FHDRTAEDAF KLVAIELNFI YEALFTKVVV  300
VHSKKGYICR AISFSAVCTA LVCFQKIEKH DFHGFDVGIT YILLFGALAL DSIAVFMLIF  360
SDWTVAAVKK SSQDSCLANI LKRYITLKQS WWFFAENANP YLERCRQLLF RRWYESVSIF  420
NLIHYSLKEC PKPSPNIFDY FCMACLEIIY LMGLKDLRDK IKYRRSKRLE KELWKFIFDQ  480
LKSKSMLADD PETARRISSA RGDWILQDSD WNNYKDCRNL LRYVVDVEFD QSILLWHIAT  540
EFCYNLDMDL KVQEKEPYKA VAVQTAIEHC KILSDYMVYL LVMQPTMMST VAGIGQIRFR  600
DTCAEAIKFF SRRELGPKVT PQEACERILE VNTDVRPVAV KGDRSKSVLF DASILAKELM  660
TLDEKKWKLM SEVWVELLAY AAGHCRANDH VQLLSKGGEL VTFVWTASSS TASEIVEAQG  720
HILRATSRKD SHSKVCTTKG PWDRSIRLVA HTAIQFYDMQ DRLGYDQPSK VVDWPRRTRR  780
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	2e-25	TCP family protein