PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000565.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 703aa MW: 78716.3 Da PI: 8.9524

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000565.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84	3.8e-26	312	397	1	80
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaes 77 a+g+kdrh k++T++ +Rd vRl a++a++f+dLqd+LG+ + s +++WL+++ak+ai++l+ +++s+ + + s Rmu_sc0000565.1_g000008.1 312 ATGRKDRHNKVCTAKVPRDHHVRLAAHTAIQFYDLQDRLGYYQSSMAVDWLIKKAKAAIDKLPPWnpnsisvQTPSS-PTVPIS 394 589************************************************************99666665422222.221222 PP TCP 78 sss 80 + Rmu_sc0000565.1_g000008.1 395 AAQ 397 222 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MVDVVVGWPF VQGIPTDGAN VNVQSSAVTK PLLTAVRWAD RYLSYSQSFR YLSSKIQRAL 60 EGDRVGAWRR VSGVMGVCQG SGGSLLSCVP IGHSFGGSRY RWRKFSDASV KSDMKLWPFK 120 VRRGPGDKPI IMVNYKNEEK QFVPEEISSM VLLKMCEIAE AYLGTTIKNV VITVPAYFSD 180 SQRQATKDAG VIAGMNVMRL INEPTAAAIA YGLDKKDSTL GGKNVLVIDL GGGTFDVSLV 240 KIEEGIFEVK STAGDTHLGG EDFDNRMVNY LVQEFERKHQ TDICNKGKIH QRTASSSTAS 300 EIMEARGHIL RATGRKDRHN KVCTAKVPRD HHVRLAAHTA IQFYDLQDRL GYYQSSMAVD 360 WLIKKAKAAI DKLPPWNPNS ISVQTPSSPT VPISAAQDTQ NASLHFSMVE APSSLFANWQ 420 GAIVGNSGVA ELVNQNSLNF LQVRMVWRWC CMSGMTKRMA GWDWSCDLRV EGWQDIVGEF 480 FPWNNPKALR RLRTSCERAK RLLSSTAQTT IEIDSLCDGI DSVSKITRAK FEELNLDLFT 540 KCLESVEKCL TDAQMDKSIV DDVVLVGGST RIPKVQEVIQ DFFNGLQLAA RGVPEILVCF 600 EIDANGILIV SARDNKTRQQ KMLTITRDNY RLSKWEIEKM VKEAEKYKLE DEEFKNKVEA 660 KMALENYAND MRNTVSHLPK LELVDKKKIG NAIKQAKRWL NEN

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MVDVVVGWPF VQGIPTDGAN VNVQSSAVTK PLLTAVRWAD RYLSYSQSFR YLSSKIQRAL  60
EGDRVGAWRR VSGVMGVCQG SGGSLLSCVP IGHSFGGSRY RWRKFSDASV KSDMKLWPFK  120
VRRGPGDKPI IMVNYKNEEK QFVPEEISSM VLLKMCEIAE AYLGTTIKNV VITVPAYFSD  180
SQRQATKDAG VIAGMNVMRL INEPTAAAIA YGLDKKDSTL GGKNVLVIDL GGGTFDVSLV  240
KIEEGIFEVK STAGDTHLGG EDFDNRMVNY LVQEFERKHQ TDICNKGKIH QRTASSSTAS  300
EIMEARGHIL RATGRKDRHN KVCTAKVPRD HHVRLAAHTA IQFYDLQDRL GYYQSSMAVD  360
WLIKKAKAAI DKLPPWNPNS ISVQTPSSPT VPISAAQDTQ NASLHFSMVE APSSLFANWQ  420
GAIVGNSGVA ELVNQNSLNF LQVRMVWRWC CMSGMTKRMA GWDWSCDLRV EGWQDIVGEF  480
FPWNNPKALR RLRTSCERAK RLLSSTAQTT IEIDSLCDGI DSVSKITRAK FEELNLDLFT  540
KCLESVEKCL TDAQMDKSIV DDVVLVGGST RIPKVQEVIQ DFFNGLQLAA RGVPEILVCF  600
EIDANGILIV SARDNKTRQQ KMLTITRDNY RLSKWEIEKM VKEAEKYKLE DEEFKNKVEA  660
KMALENYAND MRNTVSHLPK LELVDKKKIG NAIKQAKRWL NEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-28	TCP family protein