PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000399.1_g000019.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 454aa MW: 49941.3 Da PI: 6.8951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000399.1_g000019.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.5e-06	345	383	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Rmu_sc0000399.1_g000019.1 345 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 383 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MADEFQNTGN WWDSSSTSRN RFETGASPPS SGLNSLGSFG WQPDMIEIKA RSSMDSGSVS 60 GTSSMVFHDP QKLQGSDSSS GGDPSLHMMG LGLNSQTTDW NQAIFRGEKA EASFRSILQD 120 NMNSNANFQQ ETHDQQQLQW RDKLFTGSSG EMSRGFSLDQ TQFSPQYSSG ESTVTCQGLP 180 TSFQMDSAAL YGTSPTTILQ GLLGSPHDHN QPQVPQPPSP SIIFPYQASY GINSTELLPS 240 WSNKVPQFLR TSPPKHPSNS PHSHLQFSNN APFWNAPHEA AMKDVRPTFF PSLQPQFPTA 300 RFDEKPKNIS EVHQDSGAVV KKSGSEAASK RPRNEMSSTL PAFKVRKEKM GDRITALQQL 360 VSPFGKTDTA SVLSEAIEYI KFLHEQVSVL SNPYMKNGAA IQHQQKSDKS KDLEGPKHDL 420 RSRGLCLVPV SSTFPAAHEP TVDFWTPTFG GTFR

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MADEFQNTGN WWDSSSTSRN RFETGASPPS SGLNSLGSFG WQPDMIEIKA RSSMDSGSVS  60
GTSSMVFHDP QKLQGSDSSS GGDPSLHMMG LGLNSQTTDW NQAIFRGEKA EASFRSILQD  120
NMNSNANFQQ ETHDQQQLQW RDKLFTGSSG EMSRGFSLDQ TQFSPQYSSG ESTVTCQGLP  180
TSFQMDSAAL YGTSPTTILQ GLLGSPHDHN QPQVPQPPSP SIIFPYQASY GINSTELLPS  240
WSNKVPQFLR TSPPKHPSNS PHSHLQFSNN APFWNAPHEA AMKDVRPTFF PSLQPQFPTA  300
RFDEKPKNIS EVHQDSGAVV KKSGSEAASK RPRNEMSSTL PAFKVRKEKM GDRITALQQL  360
VSPFGKTDTA SVLSEAIEYI KFLHEQVSVL SNPYMKNGAA IQHQQKSDKS KDLEGPKHDL  420
RSRGLCLVPV SSTFPAAHEP TVDFWTPTFG GTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-85	bHLH family protein