PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000379.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24894.1 Da PI: 9.1263 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.3 | 1.5e-11 | 22 | 54 | 15 | 47 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47 R++ ++KKAeELS LC+++v++i++ + ++ Rmu_sc0000379.1_g000004.1 22 DRKKNLIKKAEELSKLCGVDVCLILYQRQSTIA 54 6************************98877764 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MDPQRNIQEL SSSKSDRKKV RDRKKNLIKK AEELSKLCGV DVCLILYQRQ STIAETWPQD 60 PAQVKRIITG YKANPAIRDA SIPSSETKGL EETKPRKSDG GRENVINNSD EEREMLYPTW 120 DDRLDYCSED ELFRLVTSLD AKLEASTKRI DSLSMKSCSG FVTPKNKRSK AGALDHHDKV 180 NSNLNSVPFR EINLDDPRSS RNYSGIPTMQ FMRSSYMQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 5e-16 | M-type_MADS family protein |