PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000365.1_g000062.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 689aa MW: 79814.2 Da PI: 9.8329

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000365.1_g000062.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.1	4.4e-21	121	204	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 +n+YAke+GFs+r +++ +sk++++ +++++vC+k+g ++ e++k r+r ++gCka++ v ++k +g++ ++ +++ H Rmu_sc0000365.1_g000062.1 121 FNRYAKEAGFSIRSHSNVTSKDKKQLMRKEYVCYKQGDSKVEREK-----RKRGLPKVGCKARIAVVRKKeSGRFAISVFVEAH 199 8**********************************99987766.....99********9888777********* PP FAR1 86 nHela 90 nH+l+ Rmu_sc0000365.1_g000062.1 200 NHPLT 204 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MLVSTSRSNS GIETIPEVAG NRRKTPPSWR HRHRTKPLWK KHQRPMGFKS PQESPAKVAG 60 ISDSDQGDFI PEASTSSRCN SLHGSNLPPR RRRSGGRARA RERAGFPFLE IWPSLQFPDN 120 FNRYAKEAGF SIRSHSNVTS KDKKQLMRKE YVCYKQGDSK VEREKRKRGL PKVGCKARIA 180 VVRKKESGRF AISVFVEAHN HPLTSPPRVG GIQNIGFIQC DLYNYGRTCR EEKKGRDGDL 240 LYMHFENEKE KDSSFVYTMD GDEENRVTRC FWADSISRRA YSFYGDVVIF DTTCNTNRYG 300 MIFPPFTGVN NHGQAIIFAC AFLNDETADT FVWLFKEFLN AMPGDALEND PKMIITDQDP 360 AMTKAISEAL PQTFHRYCSW HILNKFSEKL DAIKFGIPTK TFIVAYGIQV VERSLTQDGL 420 KLLRRVAGMS SSQRAESQHS FFKNYVSKWN SLVEFMVQFK RGLLHQRHYE LEENHINIDE 480 KAKTVMSLDI EDHMAKVYTR KLFDEVQKQL RESFKYKLEL VFENVTQEQF KVIRKNIDTC 540 KSRELTYEKK SDFASCSCRM FDSQGFPCRH VLAYLIKIQD VDKLPIQYIL KRWTKAARHR 600 VVLDCNGMEI KDNKALLARR TKLFQHATYA IDKVMVSDEA TKLFMEALDA FLENIKQTAV 660 DLEIETNNAT IRHVFNEPHQ VRAIKRVWE

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MLVSTSRSNS GIETIPEVAG NRRKTPPSWR HRHRTKPLWK KHQRPMGFKS PQESPAKVAG  60
ISDSDQGDFI PEASTSSRCN SLHGSNLPPR RRRSGGRARA RERAGFPFLE IWPSLQFPDN  120
FNRYAKEAGF SIRSHSNVTS KDKKQLMRKE YVCYKQGDSK VEREKRKRGL PKVGCKARIA  180
VVRKKESGRF AISVFVEAHN HPLTSPPRVG GIQNIGFIQC DLYNYGRTCR EEKKGRDGDL  240
LYMHFENEKE KDSSFVYTMD GDEENRVTRC FWADSISRRA YSFYGDVVIF DTTCNTNRYG  300
MIFPPFTGVN NHGQAIIFAC AFLNDETADT FVWLFKEFLN AMPGDALEND PKMIITDQDP  360
AMTKAISEAL PQTFHRYCSW HILNKFSEKL DAIKFGIPTK TFIVAYGIQV VERSLTQDGL  420
KLLRRVAGMS SSQRAESQHS FFKNYVSKWN SLVEFMVQFK RGLLHQRHYE LEENHINIDE  480
KAKTVMSLDI EDHMAKVYTR KLFDEVQKQL RESFKYKLEL VFENVTQEQF KVIRKNIDTC  540
KSRELTYEKK SDFASCSCRM FDSQGFPCRH VLAYLIKIQD VDKLPIQYIL KRWTKAARHR  600
VVLDCNGMEI KDNKALLARR TKLFQHATYA IDKVMVSDEA TKLFMEALDA FLENIKQTAV  660
DLEIETNNAT IRHVFNEPHQ VRAIKRVWE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-71	FAR1 family protein