PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000332.1_g000054.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 349aa MW: 39048 Da PI: 6.6019

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000332.1_g000054.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	173	219	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Rmu_sc0000332.1_g000054.1 173 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKQLQ 219 58899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MISSAKWVSE LEMEDPTFLN QYEMNSHLDY SLEDLNFQSF SAESYSSYPD FTPHQNDVDQ 60 RPAKQPKNNH SNWNSCTTTH DHIITVPRAS SSASSHLISF DNSNSSAYGS LDCTTTVKPK 120 NEVLGSGGKL NSISNMISQG NSYDPQTCSP NRAYGQGIKR AATVTRSPLH AQDHVLAERK 180 RREKLSQRFI ALSALVPGLK KMDKASVLGD AIKYVKQLQE RMKMLEEQAA KKTVESVVFV 240 KRTQYSVDDD ISSSDENFDS CSDQPLPEIE ARVSDKEVLI RIHCEKKKGC LANILSEIEK 300 LDLTILNSSV LPFGNSTLDI TVVSQMDVEY SMTVKELVRK LRQALLKLV

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MISSAKWVSE LEMEDPTFLN QYEMNSHLDY SLEDLNFQSF SAESYSSYPD FTPHQNDVDQ  60
RPAKQPKNNH SNWNSCTTTH DHIITVPRAS SSASSHLISF DNSNSSAYGS LDCTTTVKPK  120
NEVLGSGGKL NSISNMISQG NSYDPQTCSP NRAYGQGIKR AATVTRSPLH AQDHVLAERK  180
RREKLSQRFI ALSALVPGLK KMDKASVLGD AIKYVKQLQE RMKMLEEQAA KKTVESVVFV  240
KRTQYSVDDD ISSSDENFDS CSDQPLPEIE ARVSDKEVLI RIHCEKKKGC LANILSEIEK  300
LDLTILNSSV LPFGNSTLDI TVVSQMDVEY SMTVKELVRK LRQALLKLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	ERKRRE
2	179	184	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-69	bHLH family protein