PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000294.1_g000022.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 654aa MW: 71991.6 Da PI: 7.3097

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000294.1_g000022.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38	4.1e-12	294	350	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Rmu_sc0000294.1_g000022.1 294 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 350 78*****************77776664346655.77****************98 PP
2	AP2	50.6	4.9e-16	393	444	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Rmu_sc0000294.1_g000022.1 393 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 444 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MKPINDHSHN NNGSHINNNN NWLGFSLSAP HMKMEVTSSS DPHQHYSHQQ AQASSATAQL 60 PSSFYNLTPL CYENGGFHSP LTVMPLKSDG SLCIMEALTR SQAEGMVPNS SPKLEDFLGG 120 ASMGAHDYGT HQREVAMALS LDSLYYNENA EAEQQYYSGI PFPGAYQTQM EEESSKQAHI 180 VGSDSHQMTQ NWVTRQYSAA HHALNQQHMS NNSLDNGGVS GSVNGAMQCG DLQSLTLSMS 240 PGSQSSCVTA PRQISPTETE CLAMETKKRG SGKISQTKQP VHRKSIDTFG QRTSQYRGVT 300 RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG SSTHINFPLD 360 DYTTQLEEMK NMNRQEYVAH LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL 420 YLGTFGTQEE AAEAYDIAAI KFRGVNAVTN FDITRYDVEK IMASNTLLAG EFARRNKEVE 480 PNNQVIEYNS PAQNNVEANT PENSHGNSSD WKMALYQAAQ QQQATAATCV QTLDQKSLSS 540 GNYRSPASFS MALQDLIRVE SVNSSQQLMD ESAKAGAHFS NPSSLVTSLS SSREDSPDKS 600 GPTMLFAKPP MASKFISPST AAAAVSSWFP SAQLRPAAAI SMSHLPLFAA WSDT

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MKPINDHSHN NNGSHINNNN NWLGFSLSAP HMKMEVTSSS DPHQHYSHQQ AQASSATAQL  60
PSSFYNLTPL CYENGGFHSP LTVMPLKSDG SLCIMEALTR SQAEGMVPNS SPKLEDFLGG  120
ASMGAHDYGT HQREVAMALS LDSLYYNENA EAEQQYYSGI PFPGAYQTQM EEESSKQAHI  180
VGSDSHQMTQ NWVTRQYSAA HHALNQQHMS NNSLDNGGVS GSVNGAMQCG DLQSLTLSMS  240
PGSQSSCVTA PRQISPTETE CLAMETKKRG SGKISQTKQP VHRKSIDTFG QRTSQYRGVT  300
RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG SSTHINFPLD  360
DYTTQLEEMK NMNRQEYVAH LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL  420
YLGTFGTQEE AAEAYDIAAI KFRGVNAVTN FDITRYDVEK IMASNTLLAG EFARRNKEVE  480
PNNQVIEYNS PAQNNVEANT PENSHGNSSD WKMALYQAAQ QQQATAATCV QTLDQKSLSS  540
GNYRSPASFS MALQDLIRVE SVNSSQQLMD ESAKAGAHFS NPSSLVTSLS SSREDSPDKS  600
GPTMLFAKPP MASKFISPST AAAAVSSWFP SAQLRPAAAI SMSHLPLFAA WSDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-154	AP2 family protein