PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000284.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 606aa MW: 66339.9 Da PI: 8.356

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000284.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.5e-16	397	443	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Rmu_sc0000284.1_g000001.1 397 VHNLSERRRRDRINEKMRSLQELIPRC-----NKSDKASMLDEAIEYLKSLQ 443 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MNYRVPEFEM EGDYSLPASS PRSRKSTMPE DEVMELLWQN GQVVMQSQTQ RSGHKKSKYD 60 AVIPEHTRPP AAQPPPVNQY QNPQLFMQED EMAAWLQCPL GDDDPFCAEL LYTDSRNAQS 120 SNTAANLPPI SPPPPPPPRL PIHPPPPAPR RTELPNFLHF SRMTNNNKSR YESAAVGPSG 180 SKSVDSSNTA ANLPPISPPP PPPPPRLPIH PPPPAPRRTE LPNFLHFSRM TNNNKSRYES 240 AAVGPSGSKS VDSRFDASSN NASGGGRGLA ATATMSFGAA VSAGKDAVTC ETSLTSSTGD 300 SSASGSLSAE QMSIQKPPPP PPPPLPVEDR KRKERVADDA ECQSELEVVT WDGPVTSVLS 360 RTRVVGDERE DVEFESGSGK KQTRGSSSTK RSRAAEVHNL SERRRRDRIN EKMRSLQELI 420 PRCNKSDKAS MLDEAIEYLK SLQLQVQMMS MGCGMVPMMF PGVQRYMPMG MGMGMGMGMG 480 MGMGMEMGMS RPMMPFPNVL AGSTMPTAPA TAHMGPRLPL PPFRMQTMLP NDPSRVQATN 540 QSEHMLNSLG TQNQNQSRVT NFADPYQQYF TPQQMRMQLQ QNQAMPQPSS SKPSSSMGPA 600 NQESHQ

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MNYRVPEFEM EGDYSLPASS PRSRKSTMPE DEVMELLWQN GQVVMQSQTQ RSGHKKSKYD  60
AVIPEHTRPP AAQPPPVNQY QNPQLFMQED EMAAWLQCPL GDDDPFCAEL LYTDSRNAQS  120
SNTAANLPPI SPPPPPPPRL PIHPPPPAPR RTELPNFLHF SRMTNNNKSR YESAAVGPSG  180
SKSVDSSNTA ANLPPISPPP PPPPPRLPIH PPPPAPRRTE LPNFLHFSRM TNNNKSRYES  240
AAVGPSGSKS VDSRFDASSN NASGGGRGLA ATATMSFGAA VSAGKDAVTC ETSLTSSTGD  300
SSASGSLSAE QMSIQKPPPP PPPPLPVEDR KRKERVADDA ECQSELEVVT WDGPVTSVLS  360
RTRVVGDERE DVEFESGSGK KQTRGSSSTK RSRAAEVHNL SERRRRDRIN EKMRSLQELI  420
PRCNKSDKAS MLDEAIEYLK SLQLQVQMMS MGCGMVPMMF PGVQRYMPMG MGMGMGMGMG  480
MGMGMEMGMS RPMMPFPNVL AGSTMPTAPA TAHMGPRLPL PPFRMQTMLP NDPSRVQATN  540
QSEHMLNSLG TQNQNQSRVT NFADPYQQYF TPQQMRMQLQ QNQAMPQPSS SKPSSSMGPA  600
NQESHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	402	407	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	1e-32	bHLH family protein