PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000279.1_g000050.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 326aa    MW: 38405.6 Da    PI: 8.3711
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000279.1_g000050.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.9e-1717128190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerr.....traetrtg 61 
                                kf++ Y++ +GFs+ +++ +k+  n+ +++r++vCsk+g  + +++k                  + k+rr      r  tr++
  Rmu_sc0000279.1_g000050.1  17 KFFSLYSRILGFSIWRDRLQKE-GNDMVVRRQWVCSKQGLVSIKSSKhkgvdknkftkhqtigeqK-KSRRnivprGRRYTRVN 98 
                                69*****************999.6666************99988888899************9742.3333455558999**** PP

                       FAR1  62 Ckaklkvkkek.dgkwevtkleleHnHela 90 
                                C+a + v+  k ++ ++vtk+ +eHnHela
  Rmu_sc0000279.1_g000050.1  99 CQAAFSVRYCKeRELYRVTKFIHEHNHELA 128
                                *********9999***************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MDDIKAVYFP TIQEAEKFFS LYSRILGFSI WRDRLQKEGN DMVVRRQWVC SKQGLVSIKS  60
SKHKGVDKNK FTKHQTIGEQ KKSRRNIVPR GRRYTRVNCQ AAFSVRYCKE RELYRVTKFI  120
HEHNHELAMS HEVQFLLSNQ YVEDKDIAQV ECLRRAQVHT SRAYEHLVEQ VRGHDGVCFI  180
IKDLYNKISK KKRNAELDGD AQAALTWMDM RGMESQQFCC KYSLDEEGRL ANLFWRDYQS  240
FLDYSVYGDV VIMDSTYKTN MYGKLLVVFV GCNNHRATVV FGFSLIQDER EDTYTWVFEN  300
FLESMEHKQP SSILTDGDES IRNVVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-38FAR1 family protein