PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000258.1_g000040.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 513aa MW: 57982.8 Da PI: 8.6452

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000258.1_g000040.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.6	2.7e-15	56	127	1	70
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 +fYn+YAk +GF+vr+++++ s +++g++t+ ++vCs +gkr+ee + +++ rr+++etr +C + +kv+ Rmu_sc0000258.1_g000040.1 56 SFYNAYAKAMGFDVRNDYKRLSiRTTGRVTSLRLVCSAQGKRREEYMSnKKRVRRPKKETRFSCPCLFKVTF 127 5****************999999**************9988845677889********999975 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MDGSYEPSIS DIGLVSQSSI NGSDCNEMQY KGVRYDKLST EDLKGQMFKT VEEAESFYNA 60 YAKAMGFDVR NDYKRLSIRT TGRVTSLRLV CSAQGKRREE YMSNKKRVRR PKKETRFSCP 120 CLFKVTFVSS EPMPPQFARP VKVGNVTYNL YSHSFLHYGQ NVAYESLKEA LASGDFSSAS 180 EALQNRMIID PCTPKGYSYK MESSKLSPSS LGEKNEYLSV LQSRGNFSEC RSAANMMLQK 240 GKDKCLYQPC NIGSTFTPKL QGKFLATENF FHTSKFFGLG PRAFLSNLMI AGQQFCGDDW 300 SKLKKRYQAF DEEALLQYCF SSAYSVALLH DSLGISLDDE RFGAACPLPC FTCSATLRNS 360 DEDWRFGEVR EVGGEHQRCF DPVVRFSEKS GERRPVTGFR QQVIGIRRPV TGSGEISYES 420 HTSSFECLWR RTTRPSDHSG ICSRSELKVL ELGIGIKYYM TRLWIGTTPQ IVALIVDTRS 480 TVTYVPYSDC EPCGNHQRKR LETYIIAIAD KLA

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MDGSYEPSIS DIGLVSQSSI NGSDCNEMQY KGVRYDKLST EDLKGQMFKT VEEAESFYNA  60
YAKAMGFDVR NDYKRLSIRT TGRVTSLRLV CSAQGKRREE YMSNKKRVRR PKKETRFSCP  120
CLFKVTFVSS EPMPPQFARP VKVGNVTYNL YSHSFLHYGQ NVAYESLKEA LASGDFSSAS  180
EALQNRMIID PCTPKGYSYK MESSKLSPSS LGEKNEYLSV LQSRGNFSEC RSAANMMLQK  240
GKDKCLYQPC NIGSTFTPKL QGKFLATENF FHTSKFFGLG PRAFLSNLMI AGQQFCGDDW  300
SKLKKRYQAF DEEALLQYCF SSAYSVALLH DSLGISLDDE RFGAACPLPC FTCSATLRNS  360
DEDWRFGEVR EVGGEHQRCF DPVVRFSEKS GERRPVTGFR QQVIGIRRPV TGSGEISYES  420
HTSSFECLWR RTTRPSDHSG ICSRSELKVL ELGIGIKYYM TRLWIGTTPQ IVALIVDTRS  480
TVTYVPYSDC EPCGNHQRKR LETYIIAIAD KLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-06	FAR1 family protein