PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000258.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 446aa MW: 50733.8 Da PI: 5.5211

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000258.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	178	221	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ eLr+l+P+ + Kl+ a+iL A+eY+ +Lq Rmu_sc0000258.1_g000004.1 178 VAERKRRKKLNDRLYELRSLVPNiS------KLDRASILGDAIEYVMELQ 221 68*******************66......**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MTHDEIQSEP VLLDHEQMDP SNHVFCSGDN SALNFLQQFS HNLGNRMKNI SYNVNSFEDS 60 SHAPFLSDKQ MEHPFTNCSK KTGFDQATEA MQRSMMMSET QATHHMHMQY MDQSLEPGMD 120 HELEQDAGNN DKDSNIINDD GGHATDLNSD CSDHDQLDAE DDAKYRRRNG KGQAKNLVAE 180 RKRRKKLNDR LYELRSLVPN ISKLDRASIL GDAIEYVMEL QNQAKILQDE LNDDHDHEEV 240 RHVHEGAANK NCGITFQHNS LQSEIDQSQS RVDLKTEQID HKAPNGFHLG TSGDGSVSKQ 300 SPDSEVIHDH KTQQMEPQVE VAQIDGNQFF VKVFCEHKPG GFVRLMEALS SLSLEVTNAN 360 VTSFRCLVSN VFIVEKKDSE LVEADEVRDS LLELTRNPLK WRSEEMAKAS EIGIGLDNNH 420 HHHPHHQNLH NHHFSPFHLH HLPTEA

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MTHDEIQSEP VLLDHEQMDP SNHVFCSGDN SALNFLQQFS HNLGNRMKNI SYNVNSFEDS  60
SHAPFLSDKQ MEHPFTNCSK KTGFDQATEA MQRSMMMSET QATHHMHMQY MDQSLEPGMD  120
HELEQDAGNN DKDSNIINDD GGHATDLNSD CSDHDQLDAE DDAKYRRRNG KGQAKNLVAE  180
RKRRKKLNDR LYELRSLVPN ISKLDRASIL GDAIEYVMEL QNQAKILQDE LNDDHDHEEV  240
RHVHEGAANK NCGITFQHNS LQSEIDQSQS RVDLKTEQID HKAPNGFHLG TSGDGSVSKQ  300
SPDSEVIHDH KTQQMEPQVE VAQIDGNQFF VKVFCEHKPG GFVRLMEALS SLSLEVTNAN  360
VTSFRCLVSN VFIVEKKDSE LVEADEVRDS LLELTRNPLK WRSEEMAKAS EIGIGLDNNH  420
HHHPHHQNLH NHHFSPFHLH HLPTEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	186	RRRNGKGQAKNLVAERKRRKK
2	180	187	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-72	bHLH family protein