PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000258.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 548aa MW: 62290.1 Da PI: 5.5686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000258.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.3e-13	302	345	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr+l+P+ + K++Ka+iL+ A++++k+Lq Rmu_sc0000258.1_g000003.1 302 VAERKRRKKLNEKLYKLRSLVPNiS------KMDKASILKDAIDFVKDLQ 345 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MTMYNLIIER LRPLVGLKGW DYCVLWKLSE DQRFIEWIGC CCSGIDEDTQ NGGQELLFPV 60 YQVFQCRDTM QHSRTNSCDI LSRLPSSIPL DSGIYAKTMT SNQPCWLNCS SGNRDSSATI 120 ERDGTLVLVP TAGGLMIELF VSKDVSENQQ VIDFITAQCN IWREQDTLIS ASNTCSTNTP 180 VLSPSMASLD PHDANLPYNI TVDRIRLCSS ESSSPLNFLQ HVTSYNSENR MRNSTSECNY 240 DQGNSHEYSL DQPLENMKQQ GTLDDQDSIK PADHSVSDCS DQTDDTNYKT RNGKEPQSKN 300 LVAERKRRKK LNEKLYKLRS LVPNISKMDK ASILKDAIDF VKDLQRQVKE LQDVLEHNSN 360 EEGGAKRTFN SISRNHNNYQ SEGLNQHGIS MANKPKSDNP QNGFRDSDHN TNEKGQQQME 420 PQVGVTQLDG NEFFVTVFCE QKPEGFVRLM EALDSLGLEV TNANVTSFRS LVSNVFKVEK 480 RDSEILQADE VRDSLIEITR NPSKGYWPEM AKTSGNDGAL DYDHDKHHYH HHLHNYHSPP 540 YHVRHLYN

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MTMYNLIIER LRPLVGLKGW DYCVLWKLSE DQRFIEWIGC CCSGIDEDTQ NGGQELLFPV  60
YQVFQCRDTM QHSRTNSCDI LSRLPSSIPL DSGIYAKTMT SNQPCWLNCS SGNRDSSATI  120
ERDGTLVLVP TAGGLMIELF VSKDVSENQQ VIDFITAQCN IWREQDTLIS ASNTCSTNTP  180
VLSPSMASLD PHDANLPYNI TVDRIRLCSS ESSSPLNFLQ HVTSYNSENR MRNSTSECNY  240
DQGNSHEYSL DQPLENMKQQ GTLDDQDSIK PADHSVSDCS DQTDDTNYKT RNGKEPQSKN  300
LVAERKRRKK LNEKLYKLRS LVPNISKMDK ASILKDAIDF VKDLQRQVKE LQDVLEHNSN  360
EEGGAKRTFN SISRNHNNYQ SEGLNQHGIS MANKPKSDNP QNGFRDSDHN TNEKGQQQME  420
PQVGVTQLDG NEFFVTVFCE QKPEGFVRLM EALDSLGLEV TNANVTSFRS LVSNVFKVEK  480
RDSEILQADE VRDSLIEITR NPSKGYWPEM AKTSGNDGAL DYDHDKHHYH HHLHNYHSPP  540
YHVRHLYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	311	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-119	bHLH family protein