PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000227.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 267aa    MW: 30090 Da    PI: 10.6568
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000227.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.11.1e-31108164158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                +ep+YVNaKQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF
  Rmu_sc0000227.1_g000003.1 108 NEPIYVNAKQYRAILRRRQFRAKLEAQNKL-TKVRKPYLHESRHVHALKRARGSGGRF 164
                                59****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MSQLFLRLMS RLFPRFLTPW TPRNRSPSDA GPHLVQGSPD YRTIRTPDVD PKSCTRSNSA  60
WAHVPFHCAE PYFGGLLAAY GPQAMFHHPQ MMGISPGRVP LPLDLTENEP IYVNAKQYRA  120
ILRRRQFRAK LEAQNKLTKV RKPYLHESRH VHALKRARGS GGRFLNMKKL QDSKPNSTSH  180
RVDASGSAQL HLTRNMSESD VHEADNFRDG ASTTSCSDVT STSNSDDIFP RQDFRFSGYP  240
SHIGGMLQVS LVDVRGGGNQ HHVSIFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-60NF-YA family protein