PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000221.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 396aa MW: 45615.6 Da PI: 6.6758

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000221.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.8	2.9e-26	39	128	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn+Y+ + GFs+r++++ k+k++geit r fvC keg r+++k++ r++ra+trtgC+a+l +k+++ ++k+ vt++++ Rmu_sc0000221.1_g000020.1 39 DFYNRYGGKEGFSIRRESHAKNKKTGEITLRVFVCCKEGIRSKDKRD-YMIRKSRAKTRTGCHAELCIKLNRkNNKFFVTHFVE 121 6*****************************************999.99****************999******* PP FAR1 84 eHnHela 90 eHnH+l+ Rmu_sc0000221.1_g000020.1 122 EHNHPLV 128 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MDNALGATDV NVENFDFDLE LDWKPRKGME FDSEQAAYDF YNRYGGKEGF SIRRESHAKN 60 KKTGEITLRV FVCCKEGIRS KDKRDYMIRK SRAKTRTGCH AELCIKLNRK NNKFFVTHFV 120 EEHNHPLVVK ECSHMLPSQR KVQDCQGIDI DLAHDSGIGV TSLYELMGKQ AGGRDAVGYT 180 KQDVKNYLRS KRQRSLEYGE AGYIMKYFSD QTLENPSFYH AMQLDSEEQI TNLFWADAKM 240 IIDYGQFGDV VSFDTTYKIN KSNRPLAVFV GFNHHHETII FGVVLMYDET ADSFIWLFGT 300 FFRAMSGKAP KTIFTDQDAA MAKALRHVMP DAYHRLCKWH MMQNSIKHGS SFLTEDGGIT 360 SILSRFIENI EEEDEFISAW DAMLDKYGAP DSTYMI

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MDNALGATDV NVENFDFDLE LDWKPRKGME FDSEQAAYDF YNRYGGKEGF SIRRESHAKN  60
KKTGEITLRV FVCCKEGIRS KDKRDYMIRK SRAKTRTGCH AELCIKLNRK NNKFFVTHFV  120
EEHNHPLVVK ECSHMLPSQR KVQDCQGIDI DLAHDSGIGV TSLYELMGKQ AGGRDAVGYT  180
KQDVKNYLRS KRQRSLEYGE AGYIMKYFSD QTLENPSFYH AMQLDSEEQI TNLFWADAKM  240
IIDYGQFGDV VSFDTTYKIN KSNRPLAVFV GFNHHHETII FGVVLMYDET ADSFIWLFGT  300
FFRAMSGKAP KTIFTDQDAA MAKALRHVMP DAYHRLCKWH MMQNSIKHGS SFLTEDGGIT  360
SILSRFIENI EEEDEFISAW DAMLDKYGAP DSTYMI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-86	FAR1 family protein