PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000215.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 200aa    MW: 21892.9 Da    PI: 6.342
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000215.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.45e-10881201243
                                HHHHHHHHHH.HHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF  12 tfskRrngil.KKAeELSvLCdaevaviifsst 43 
                                +fs   +gi  KKA ELS+LC+++v++iif ++
  Rmu_sc0000215.1_g000020.1  88 SFSGIGKGICgKKADELSTLCGTDVCMIIFKPQ 120
                                55555566655******************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MPLNIVKASR ARAFVGGSFG ELLSPFSHME PKPSSRPPSH RSHCPVFTRP LPFALARSDF  60
QNLFLSPIGS SSSMDPTVRS SSPARRESFS GIGKGICGKK ADELSTLCGT DVCMIIFKPQ  120
KTKPETWPRD FRDATDATTA HSTCSHVTNN TMKLDLNLSD SYDSELIGDD EAELDLDVLC  180
LSLCLQDFLL LPSILKLDNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-07M-type_MADS family protein