PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000215.1_g000011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 124aa MW: 14309.5 Da PI: 10.0453 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.9 | 2.3e-07 | 13 | 42 | 14 | 43 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsst 43 R + KK + LS+LC+++v +i+f ++ Rmu_sc0000215.1_g000011.1 13 QDRERNLCKKVYKLSILCGTDVYMIVFKPH 42 5688999*******************9765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence |
MELLPSSRKK LLQDRERNLC KKVYKLSILC GTDVYMIVFK PHKTKPETWP LDCTQVHRII 60 NTYKAKLAMK NNDIKGTRSP SSLGAIRDAT DATTAHSNCS HETNKKMKLD LNLSDSYDNR 120 IDWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 4e-09 | M-type_MADS family protein |