PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000185.1_g000040.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28740.5 Da    PI: 9.9629
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000185.1_g000040.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.7e-312978150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Rmu_sc0000185.1_g000040.1 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 78
                               79***********************************************8 PP
2K-box114.31.2e-37961924100
                      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                s++ s++ea+ + +qqe++kL+++i+++q+++Rh+lGe L++L++keL++Le +Lek++++iRskKne+l+++ie++qk+e el
  Rmu_sc0000185.1_g000040.1  96 SNTGSVTEANVQFYQQEASKLRRQIREIQNSNRHILGEALSTLNVKELKNLEGRLEKGISRIRSKKNEMLFAEIEYMQKREIEL 179
                                334449****************************************************************************** PP

                      K-box  88 qeenkaLrkklee 100
                                q++n+ Lr+k++e
  Rmu_sc0000185.1_g000040.1 180 QNHNNFLRAKIAE 192
                                **********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEFPKQITPA DDPESSSQKK LGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALIVFST RGRLYEYANN SVRATIERYK KACDSSNTGS VTEANVQFYQ QEASKLRRQI  120
REIQNSNRHI LGEALSTLNV KELKNLEGRL EKGISRIRSK KNEMLFAEIE YMQKREIELQ  180
NHNNFLRAKI AENDRAQQQQ ANMMPGTSSA YDQSMPPPQS YDRSFLPVIL ESNHHYNRQG  240
QNQTPLQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-120MIKC_MADS family protein