PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000142.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 295aa    MW: 33619 Da    PI: 7.419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000142.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.6e-081256345
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                WT+eE +++ +a +++ ++   +W+++a+ ++ g+t  +++  + 
  Rmu_sc0000142.1_g000001.1 12 EWTAEENKRFENALALYDKDtpdRWHKVASWIP-GKTVGDVIKQYK 56
                               5********************************.***999988775 PP
2Myb_DNA-binding45.32e-14121165347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT+eE+ +++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
  Rmu_sc0000142.1_g000001.1 121 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 165
                                8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
SNWLFQESKG AEWTAEENKR FENALALYDK DTPDRWHKVA SWIPGKTVGD VIKQYKELEE  60
DVSDIEAGLI PIPGYSSNNS FTLEWADDQG FDGLKQYYST VGGKRGSSTR PSEQERKKGV  120
PWTEEEHRQF LMGLKKYGKG DWRNISRNFV TSRTPTQVAS HAQKYYIRQL TGGKDKRRSS  180
IHDITTVNLS DTKSGSQESN QSNTKSPPSQ DHDSAVAVQS QQHAKVSNKQ QFDWKVSKEG  240
PQMVFNSMNG NAIIGPFFGI SSHVPKIEEQ DFFIGNTFHG SQFDHHNVRF EMQYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-114MYB family protein