PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000114.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 312aa    MW: 34549.9 Da    PI: 10.0245
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000114.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.46.4e-30147202258
                  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                 p+YVNaKQy++I++RRq+Rak+  e++  +++rkpy+heSRh hA+rRpRg+gGrF
  Rmu_sc0000114.1_g000002.1 147 GPIYVNAKQYHGIIRRRQSRAKAVMENRA-ARHRKPYMHESRHLHAMRRPRGCGGRF 202
                                69***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MQTVYFKEHE GLGQLSSVLP WWGTAFGSQQ VHGESCGQSK PFTMELPNNG DQPTATKKPG  60
RGTEQGLDKG NTNQFTIFPG DGKKSQPAIS LQSSPPKHRG HFELGFSQPM ICGKYPYMDQ  120
CYGLFSTYGP QVPGRIMLPL NLTTDEGPIY VNAKQYHGII RRRQSRAKAV MENRAARHRK  180
PYMHESRHLH AMRRPRGCGG RFLNTKTSNN GKGRNEMKLV GDVQLFRHSG SQSSEVLQSE  240
SGTLNSSKTN GSSSNISGSE VTSTYSRGDP FSMNHHHLGP SVHYLSDMMD GRGMVMPTKW  300
IAAVDNCCNL KV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.26e-54NF-YA family protein