PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000078.1_g000042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 314aa MW: 34928.9 Da PI: 10.6159 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2.1e-31 | 252 | 309 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeH+h+ Rmu_sc0000078.1_g000042.1 252 DEYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHKHS 309 9************************9988****************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence |
MEKVESANKA AVESCHTVLN SLLCKPKNDI QSKSLGVQTE EAVVKFKRVV SLLSHGRRIR 60 KLKKKLDSSL PQSLFLDGPN YRSDISSKTL QLLPATFPQN LHTQNQKVFL GNPVLDMSNK 120 LPLQIAKPKP LQQLHRLQVH PQQFTGINLA FNKPSTTPSL SNAASFISCL SMDAGGVANY 180 GSNSFRLING SVPQSSDQIS QQQRRSSGAE QSSSVKCGSN DKCPNSRKRR LRVRRSFKVP 240 AVSQNVANIP GDEYSWRKYG QKPIKGSPYP RGYYKCSSMR GCPARKHVER CLEDPSMLIV 300 TYEGEHKHSQ SAHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 63 | RRIRKLK |
2 | 230 | 239 | RLRVRRSFKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 1e-84 | WRKY family protein |