PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000058.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 320aa MW: 36525.3 Da PI: 10.287

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000058.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	37.8	4.4e-12	106	157	5	50
G2-like 5 rWtpeLHerFveaveqLGG..sekAtPktilelmk....vkgLtlehvkSHL 50 Wt e H+r veav qLGG s k+tPk++l+lm+ +gLt + ++ HL Rmu_sc0000058.1_g000004.1 106 SWTLEHHRRVVEAVIQLGGlsSSKTTPKAVLKLMDeedrCQGLTTKMIAHHL 157 7****************545799*****83333579*****998 PP
2	Myb_DNA-binding	26.3	1.8e-08	106	158	3	45
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT.....TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg.....kgRtlkqcksrwq 45 +WT e + + v+av qlGg t+k++ + m +g+t k++ ++++ Rmu_sc0000058.1_g000004.1 106 SWTLEHHRRVVEAVIQLGGLsssktTPKAVLKLMDeedrcQGLTTKMIAHHLL 158 7***************88*****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MNISRFGVEG DRQETSSPKM FEWTLEHHKK CVDTFILLGG DKEKVGVHNA LKVELLSLAG 60 CCCRSFYLDF HISLLGVLQK SSDVLFSSNK VTLESLYVAP QKMSSSWTLE HHRRVVEAVI 120 QLGGLSSSKT TPKAVLKLMD EEDRCQGLTT KMIAHHLLGL YHLQKETQRL ITFGLAGGEE 180 ERELARRELR ILLQARPNYS SDLRCWTTYC QGEPPATPSD LKKRVEEEAA VPTSSTKNLS 240 AVAHFVHLLT KPICNFQEKK VEEEKKRRKG KKKGRRRRDK SDQVEGRRRK KREKKKRKVV 300 STFFISTFPC LHVAASLPKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	269	KKRRK
2	265	278	KKRRKGKKKGRRRR
3	265	298	KKRRKGKKKGRRRRDKSDQVEGRRRKKREKKKRK
4	266	299	KKRRKGKKKGRRRRDKSDQVEGRRRKKREKKKRK
5	266	298	KRRKGKKKGRRRRDKSDQVEGRRRKKREKKKRK
6	267	278	RRKGKKKGRRRR
7	268	276	RKGKKKGRR
8	271	292	KKKGRRRRDKSDQVEGRRRKKR
9	271	284	KKRRKGKKKGRRRR
10	275	296	KKKGRRRRDKSDQVEGRRRKKR
11	275	280	RRRRDK
12	276	297	KKKGRRRRDKSDQVEGRRRKKR
13	287	295	RKGKKKGRR
14	287	292	RRRKKR
15	287	292	RRRRDK
16	288	293	RRRRDK
17	289	294	RRRRDK
18	294	299	KKKRKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.4	1e-06	G2-like family protein