PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000041.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 694aa MW: 80310.8 Da PI: 8.9556

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000041.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.1	2.9e-18	38	120	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fY++ Ake GF+v+ +s+k+ ng i+++ +vCsk+g+++ + kk r+r tr++Cka+++v ++ gk++vt +++ Rmu_sc0000041.1_g000017.1 38 FYKSCAKESGFDVKSFTSEKK--NGVIVRKAYVCSKQGTSKVTGKK-----RNRIRTRVNCKARIVVVRRApIGKYVVTIFDEG 114 9**********99998887..9************998888.....9*********9999999******** PP FAR1 85 HnHela 90 H+H+l+ Rmu_sc0000041.1_g000017.1 115 HSHPLT 120 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MESQQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SCAKESGFDV KSFTSEKKNG 60 VIVRKAYVCS KQGTSKVTGK KRNRIRTRVN CKARIVVVRR APIGKYVVTI FDEGHSHPLT 120 TPRRKHLTKI HREVSSIHKS LTKQLTAVNV PTCTQFDFLG VHSGGVENIG CLQQDIYNYK 180 RDCRKEVKGH DGDMLHEYFL LEKEKDPSLI FKIEADNENR ITHIFWADAI SRRSYKFYGD 240 VVIFGTTYNT NMYSLIFAPL MQCRDAPRMI ITDQDPAMTK AISEVLPQTF HRYCSWHILN 300 KFSEKIDPGK YTRYYDEFQD CIWNSENRDE FDARWTSIVV SSGLGDNGWL KTMYDIRSTW 360 VPAYVNHIFS AGMSSSQRAE SGHAFYKRFV SKENTLLDFM VQFNRAVTHQ RHMELMKDHV 420 DINEKPNFHS PFEMADQMAR VYTHECFKEF YDQLSQCCNY RFELSHENDT YMVYIALRKK 480 MENPKGREII YAKESDFVSC SCKKFETAGI PCKHILAFLI FIRLVDRLPD QYILKRWTKS 540 RKAETVLDDV GVEITYNRDL LARRSRLCQY AVDVIDTIMG SEEASDLFVD SLTSVLEMYN 600 SKMADGETLK SAIVPAEQKS LHSQHIYNEP IQVRAKGCGK RLKAGKEKGR LKAAKKANGK 660 GRFCHGCKKN DQKHDKRNCP ELKNKNDISI PQTG

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MESQQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SCAKESGFDV KSFTSEKKNG  60
VIVRKAYVCS KQGTSKVTGK KRNRIRTRVN CKARIVVVRR APIGKYVVTI FDEGHSHPLT  120
TPRRKHLTKI HREVSSIHKS LTKQLTAVNV PTCTQFDFLG VHSGGVENIG CLQQDIYNYK  180
RDCRKEVKGH DGDMLHEYFL LEKEKDPSLI FKIEADNENR ITHIFWADAI SRRSYKFYGD  240
VVIFGTTYNT NMYSLIFAPL MQCRDAPRMI ITDQDPAMTK AISEVLPQTF HRYCSWHILN  300
KFSEKIDPGK YTRYYDEFQD CIWNSENRDE FDARWTSIVV SSGLGDNGWL KTMYDIRSTW  360
VPAYVNHIFS AGMSSSQRAE SGHAFYKRFV SKENTLLDFM VQFNRAVTHQ RHMELMKDHV  420
DINEKPNFHS PFEMADQMAR VYTHECFKEF YDQLSQCCNY RFELSHENDT YMVYIALRKK  480
MENPKGREII YAKESDFVSC SCKKFETAGI PCKHILAFLI FIRLVDRLPD QYILKRWTKS  540
RKAETVLDDV GVEITYNRDL LARRSRLCQY AVDVIDTIMG SEEASDLFVD SLTSVLEMYN  600
SKMADGETLK SAIVPAEQKS LHSQHIYNEP IQVRAKGCGK RLKAGKEKGR LKAAKKANGK  660
GRFCHGCKKN DQKHDKRNCP ELKNKNDISI PQTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-76	FAR1 family protein