PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000028.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 28023.8 Da PI: 9.3664 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.9 | 6.2e-19 | 9 | 45 | 15 | 51 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +R +++lKKA+ELS+LCdaeva+i fs++g+l+eyss Rmu_sc0000028.1_g000010.1 9 RRHATLLKKANELSILCDAEVAIIAFSPDGELHEYSS 45 5999*******************************96 PP | |||||||
2 | K-box | 29.2 | 3.9e-11 | 81 | 158 | 21 | 98 |
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + L+++ + L+ e+ +++G++L+ Ls L L +q k+l + skK ell e++++++ +e+++++en L++kl Rmu_sc0000028.1_g000010.1 81 KQELQERHKALRLEKLQRMGKELDGLSSDALATLLEQQTKGLLAVHSKKVELLEEKLQRSRSREEQAKHENGLLEEKL 158 45799*******************************************************************999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MPKTANPGRR HATLLKKANE LSILCDAEVA IIAFSPDGEL HEYSSTSMEH TLERYKYRTG 60 LVLPSRVESP APEEHRHEPA KQELQERHKA LRLEKLQRMG KELDGLSSDA LATLLEQQTK 120 GLLAVHSKKV ELLEEKLQRS RSREEQAKHE NGLLEEKLLR SRSREEQTMH ENKSLRRRIA 180 GFMMRQNYKR HILPCHPANY FDRNFGNRMG FCTSSRAAVS VSNYPSEGTD DHLDMTTLRL 240 WPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 1e-21 | MIKC_MADS family protein |