PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8520667.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26147.9 Da PI: 4.2981 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 99 | 148 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f+tae+Aa a+++a+ +++g Rmu_co8520667.1_g000001.1 99 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEDAALAYDQAAFAMRG 148 9*******.**********44465..*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MDSSEFSFES CSSFSSLGSD LSWDLFNFDH SYNQVQVPAQ LPFNENDSEE MVLYGVLAQA 60 GAGDSSDATS TAHLSKDHEE VNSNAAVEYE EPMKDEIAYR GVRRRPWGKY AAEIRDSTRN 120 GVRVWLGTFD TAEDAALAYD QAAFAMRGTL AVLNFPADVV YQSLVDMNYG FEEGSSPVLA 180 LKKRHSMKRK SSMNKKKKNV QKCDDDVEEL RLENVVVFED LGADYLEELL SISS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 198 | KKRHSMKRKSSMNKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-50 | ERF family protein |