PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8516861.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 964aa    MW: 106388 Da    PI: 4.7852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8516861.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-12442948
                               HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               de+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  Rmu_co8516861.1_g000001.1  4 DEILRRAVQSFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 42
                               9**********************9.************986 PP
2Myb_DNA-binding67.13e-214894148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W++eEde++v++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Rmu_co8516861.1_g000001.1 48 KGPWSKEEDEIIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 94
                               79******************************.*************97 PP
3Myb_DNA-binding46.67.7e-15100142145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Rmu_co8516861.1_g000001.1 100 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 142
                                579*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    
MYQDEILRRA VQSFKGKNWK KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEIIV  60
ELVKKYGPKK WSTIAQHLPG RIGKQCRERW HNHLNPGINK EAWTQDEELA LIRAHQIYGN  120
KWAELTKFLP GRTDNAIKNH WNSSVKKKLD SYLKSGLLPD LEGTPHVGHQ NQPIISSCSR  180
VQNSGDDSAP RGAEGEEISE CSQDSNVAGC FQSRTEMVNV VLHTRDRSHI REVSRLGNDP  240
SSSPASCSEP YYPSMGDATF SIPEIPPEIV SSSKFIEQSF SHDAGESMSG DFQFNMQELT  300
NISSLESEQG ASGMHTHCMS SNEIHDVVNF PFQTAGAFPA STSMGNMADG SVKSERMLIS  360
DDECCRALFS EAINQGYFSR DFTNGLNMVD LIACTDSLLL QSSSNLQMSE TGRSSQLYCP  420
LNSDVVGTSC SQPVSAHNGP LIFAGEANNL FRVQEQEYVT NSEDGFVYTN DTARSPSNVV  480
GNETRMQEQS DLVEDPSNLV PVNTFDSGLD TQTSPSLDVR SDVHTEQQDD GALCYEPPRF  540
PSLDIPFLSC DLVQSGNDMQ QEYSPLGIRQ LMMSSMNCLT PFRLWDSPSR DGSPDAVLKS  600
AAKTFTGTPS ILKKRHRDLL SPLSPLSDRR IDKKLGTDVT SSLARDFSRL EVMFEDSETQ  660
EAPLHYPSSN QQRTSDAHEE DKENMDTCET RIEEGTDTVA ISADEIAQKH FDDSESQEKM  720
KQGNADVDAK TKADAVPSSH DAQQSSGVLA EHNTNDLLLY SPDQAGCKAE KALSLSAGTP  780
KVQHSKSFSA KQCSSVITPT ITVKKRESYL VTQTCIQSDL LSAPLETTSD NAGNGASTET  840
IFGVTPLKRS IDSPSAWKSP SAWKSPSAWK SPWFINSFLP GPRVDTEITI EDIGFFMSPG  900
DRSYDAIGLM KQISEHTASA YANAQEVLGN ETPESLLKER RKDHGIVDSD KNLAPPNQLG  960
SSSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0MYB family protein