PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8513183.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 674aa    MW: 74539.4 Da    PI: 6.841
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8513183.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-21106161156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  Rmu_co8513183.1_g000001.1 106 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 161
                                688999***********************************************999 PP
2START201.34e-633105331206
                                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                                ela++a++elvk+a+  +++W +s     e +n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+
  Rmu_co8513183.1_g000001.1 310 ELALAAMDELVKLAQT-DELWLRSLeggrEVLNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDSN-RWLEM 391
                                57899******99985.68*********99***********9999899999***************************.***** PP

                                -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS
                      START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148
                                ++    + +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++++  + +v +++l
  Rmu_co8513183.1_g000001.1 392 FPcmiaRTSTTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRDNSGAPTFVNCRRL 475
                                *************************************************************************9********** PP

                                SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                      START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                pSg+++++++ng+skvtwveh++++++++h l+r+l++sg+ +ga++wvatlqrqc++
  Rmu_co8513183.1_g000001.1 476 PSGCVVQDMPNGYSKVTWVEHAEYDESQVHHLYRPLLSSGMGFGAQRWVATLQRQCQC 533
                                ********************************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    
HHHHHHNANH TSMPSSAIAQ PRLVTQSLTK SMFNNSPGLS LALQTNADGG GDAPRMPENF  60
EPNNNVGGRR SREEENEISR SGSDNMDGAG SGDEGDAADN SNPRKKKRYH RHTPQQIQEL  120
EALFKECPHP DEKQRLELSR RLNLETRQVK FWFQNRRTQM KTQLERHENS LLRQENDKLR  180
AENMSIRDAM RNPICTNCGG PAMIGDISIE EQHLRIDNAR LKDELDRVCA LAGKFLGRPI  240
SSLGPSMGPP LPSSALELGV GNNGFGGMSS VATTMPLGPD FGAGLGGGMP IVAHTRPVAG  300
GLDERTMFLE LALAAMDELV KLAQTDELWL RSLEGGREVL NHEEYMRSFT PCIGLKPNGF  360
VTEASRETGM VIINSLALVE TLMDSNRWLE MFPCMIARTS TTDVISSGMG GTRNGALQLM  420
HAELQVLSPL VPVREVNFLR FCKQHAEGVW AVVDVSVDTI RDNSGAPTFV NCRRLPSGCV  480
VQDMPNGYSK VTWVEHAEYD ESQVHHLYRP LLSSGMGFGA QRWVATLQRQ CQCLAILMSS  540
TVPARDHANT ITQSGRKSML KLAQRMTDNF CAGVCASTVH KWNKLHAGNV DEDVRYMTRE  600
SMDDPGEPPG IVLSAATSVW LPVSPQRLFN FLRDERLRSE WDILSNGGPM QEMAHIAKGQ  660
DQGNCVSLLR ARVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein