PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8510597.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 294aa    MW: 32526.4 Da    PI: 10.027
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8510597.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.91.3e-31135191158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                +ep+YVNaKQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF
  Rmu_co8510597.1_g000001.1 135 NEPIYVNAKQYRAILRRRQFRAKLEAQNKL-TKVRKPYLHESRHVHALKRARGSGGRF 191
                                59****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MGVPLQHCRN TTKSGIHLQD QDSSSTQSTG QSRSEFASLK ERNPCGQGVV SGYNETQGRP  60
VGGHKKSLSS ITSQELVFAS QLDFSHSMAH VPFHCAEPYF GGLLAAYGPQ AMFHHPQMMG  120
ISPGRVPLPL DLTENEPIYV NAKQYRAILR RRQFRAKLEA QNKLTKVRKP YLHESRHVHA  180
LKRARGSGGR FLNMKKLQDS KPNSTSHRVD ASGSAQLHLT RNMSESDVHE ADNFRDGAST  240
TSCSDVTSTS NSDDIFPRQD FRFSGYPSHI GGMLQVSLVD VRGGGNQHHV SIFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-61NF-YA family protein